diff --git a/rules/ANALYSIS_RULES b/rules/ANALYSIS_RULES index 4da7df8d269330b163f4346e9849176d7465dd32..d33fe5f0c1fb6a953f24c3841007d7c384afc570 100755 --- a/rules/ANALYSIS_RULES +++ b/rules/ANALYSIS_RULES @@ -183,7 +183,8 @@ rule minced: shell: """ (date &&\ - ./minced {input} {output.mn1} {output.mn2} &&\ + export PATH=$PATH:/mnt/lscratch/users/sbusi/ONT/cedric_ont_basecalling/2019_GDB/crispr/minced/ &&\ + minced {input} {output.mn1} {output.mn2} &&\ echo $(basename -s "" {output.mn1}) >> minced_CRISPR_output.txt &&\ grep -c 'CRISPR' {output.mn1} >> minced_CRISPR_output.txt &&\ date) &> >(tee {log})