diff --git a/config/GDB/config.yaml b/config/GDB/config.yaml index 5fdb605e4257249858df120819e59817b39fc7b9..1c1d55e9ea21cc6b4c3b51f83198457a9ee4d1e5 100644 --- a/config/GDB/config.yaml +++ b/config/GDB/config.yaml @@ -74,13 +74,15 @@ fastp: # rRNA gene filtering sortmerna: - threads: 20 + threads: 28 # References to be used (w/ md5sums) refs: [ - # db6e72022cf650c4b33bd888b92a0391 silva-bac-16s-id90.fasta + "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-arc-16s-id95.fasta", + "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-arc-23s-id98.fasta", "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-bac-16s-id90.fasta", - # f347d2f8f8ffbfa28c785e3a9fe3db79 silva-bac-23s-id98.fasta - "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-bac-23s-id98.fasta" + "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-bac-23s-id98.fasta", + "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-euk-18s-id95.fasta", + "/mnt/irisgpfs/projects/ecosystem_biology/local_tools/IMP3/databases/sortmerna/silva-euk-28s-id98.fasta" ] # FastQ QC diff --git a/config/GDB/slurm.yaml b/config/GDB/slurm.yaml index 2e16e2013e8ba79500a9c202a2e90427afe0d1b4..c39f241848e4a2ccf774fb3e170be524f2892b03 100644 --- a/config/GDB/slurm.yaml +++ b/config/GDB/slurm.yaml @@ -240,7 +240,7 @@ tax_kraken2_lr: n: 1 explicit: "" -tax_kaiju_cdhit: +tax_kaiju: time: "00-00:30:00" partition: "bigmem" qos: "qos-bigmem"