diff --git a/config/Zymo/slurm.zymo.yaml b/config/Zymo/slurm.zymo.yaml index e919e8929f4d68dda7d25b1f056faa8f735bbcb5..3b0197942760dd361a0d8a019f2f7c60144ef0b3 100644 --- a/config/Zymo/slurm.zymo.yaml +++ b/config/Zymo/slurm.zymo.yaml @@ -44,4 +44,4 @@ comparison: sibeliaz: partition: "batch" quality: "normal" - runtime: "00-04:00:00" + runtime: "00-00:30:00" diff --git a/workflow_zymo/Snakefile b/workflow_zymo/Snakefile index 1a6d41475b0aa2d3b0c1afc8f16e59e08eadfd73..3b9aea7719f4c77971f5070d6e456ab4ca2ecdca 100644 --- a/workflow_zymo/Snakefile +++ b/workflow_zymo/Snakefile @@ -279,5 +279,5 @@ rule sibeliaz: "Genome comparision: Sibeliaz: {input.asm1} {input.asm2}" shell: "(date && " - "sibeliaz -t {threads} -k {params.kmers} -f {params.memory} -o $(dirname {output}) {input.asm1} {input.asm2} && " - "date) 2> {log.err} > {log.out}" \ No newline at end of file + "sibeliaz -n -t {threads} -k {params.kmers} -f {params.memory} -o $(dirname {output}) {input.asm1} {input.asm2} && " + "date) 2> {log.err} > {log.out}"