diff --git a/workflow_report/rules/collect_data.smk b/workflow_report/rules/collect_data.smk index 0e92f4fe20b33c0bd9c4a3a6235e2f318200377c..8a888f035a4b8af188a39408be96a1bc47717e54 100644 --- a/workflow_report/rules/collect_data.smk +++ b/workflow_report/rules/collect_data.smk @@ -291,7 +291,7 @@ rule collect_cdhit: for f in {input} do f_bname=$(basename -s '.faa' ${{f}}) - echo -e \"$(echo ${{f_bname}} | sed 's/__/\\t/' | sed 's/_/\\t/g')\\t$(grep '^>' ${{f}} | wc -l)\" + echo -e \"$(echo ${{f_bname}} | sed 's/__/\\t/' | sed 's/\(sr\|lr\|hy\|hyhy\)_/\\1\\t/g')\\t$(grep '^>' ${{f}} | wc -l)\" done >> {output} """