From bc348a21627201dc6824853ee37235da739e2750 Mon Sep 17 00:00:00 2001
From: Valentina Galata <valentina.galata@uni.lu>
Date: Thu, 8 Oct 2020 14:07:26 +0200
Subject: [PATCH] fixed a bug: wrong symbol in operams installation cmd (issue
#43)
---
workflow/rules/setup.smk | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rules/setup.smk b/workflow/rules/setup.smk
index 324ed20..384db5c 100644
--- a/workflow/rules/setup.smk
+++ b/workflow/rules/setup.smk
@@ -41,7 +41,7 @@ rule install_operams:
message:
"Setup: install OPERA-MS"
shell:
- "(cd ${params.path} && make && perl utils/install_perl_module.pl && perl OPERA-MS.pl check-dependency) &> {log} && touch {output}"
+ "(cd {params.path} && make && perl utils/install_perl_module.pl && perl OPERA-MS.pl check-dependency) &> {log} && touch {output}"
# Download RGI data
rule download_rgi_db:
--
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