diff --git a/2019_GDB/rules/ANALYSIS_RULES b/2019_GDB/rules/ANALYSIS_RULES index 105255af1182b431ca7764ec0f6b646739a83d50..d1eb5734fc72462b88be17c55045b39f0d95af12 100755 --- a/2019_GDB/rules/ANALYSIS_RULES +++ b/2019_GDB/rules/ANALYSIS_RULES @@ -187,8 +187,8 @@ rule minced: (date &&\ export PATH={config[minced][PATH]} &&\ minced {input} {output.mn1} {output.mn2} &&\ - echo $(basename -s ".txt" {output.mn1}) >> minced_CRISPR_output.txt &&\ - grep -c 'CRISPR' {output.mn1} >> minced_CRISPR_output.txt &&\ + echo $(basename -s ".txt" {output.mn1}) >> analysis/crispr/minced/minced_CRISPR_output.txt &&\ + grep -c 'CRISPR' {output.mn1} >> analysis/crispr/minced/minced_CRISPR_output.txt &&\ date) &> >(tee {log}) """ diff --git a/rules/ANALYSIS_RULES b/rules/ANALYSIS_RULES index 105255af1182b431ca7764ec0f6b646739a83d50..d1eb5734fc72462b88be17c55045b39f0d95af12 100755 --- a/rules/ANALYSIS_RULES +++ b/rules/ANALYSIS_RULES @@ -187,8 +187,8 @@ rule minced: (date &&\ export PATH={config[minced][PATH]} &&\ minced {input} {output.mn1} {output.mn2} &&\ - echo $(basename -s ".txt" {output.mn1}) >> minced_CRISPR_output.txt &&\ - grep -c 'CRISPR' {output.mn1} >> minced_CRISPR_output.txt &&\ + echo $(basename -s ".txt" {output.mn1}) >> analysis/crispr/minced/minced_CRISPR_output.txt &&\ + grep -c 'CRISPR' {output.mn1} >> analysis/crispr/minced/minced_CRISPR_output.txt &&\ date) &> >(tee {log}) """