diff --git a/workflow/envs/cd-hit.yaml b/workflow/envs/cd-hit.yaml index deae582dc1c8d3f56ff3fa1a67039bad21e508d9..3273ec460ee4a28e8d9f5e5cb0d4ca8c23e05d65 100644 --- a/workflow/envs/cd-hit.yaml +++ b/workflow/envs/cd-hit.yaml @@ -1,11 +1,10 @@ -name: cd-hit channels: - conda-forge - bioconda - - defaults - r - etetoolkit - au-eoed + - defaults dependencies: - _libgcc_mutex=0.1 - _openmp_mutex=4.5 @@ -26,5 +25,3 @@ dependencies: - openssl=1.1.1g - wget=1.20.1 - zlib=1.2.11 -prefix: /home/users/sbusi/apps/miniconda3/envs/cd-hit - diff --git a/workflow/envs/cdhit.yaml b/workflow/envs/cdhit.yaml new file mode 100644 index 0000000000000000000000000000000000000000..4a8fddea66caa2ec033115b9638bf73030cebe7b --- /dev/null +++ b/workflow/envs/cdhit.yaml @@ -0,0 +1,14 @@ +channels: + - bioconda + - conda-forge + - defaults +dependencies: + - _libgcc_mutex=0.1=conda_forge + - _openmp_mutex=4.5=0_gnu + - cd-hit=4.8.1=h8b12597_3 + - libgcc-ng=9.2.0=h24d8f2e_2 + - libgomp=9.2.0=h24d8f2e_2 + - libstdcxx-ng=9.2.0=hdf63c60_2 + - llvm-openmp=8.0.1=hc9558a2_0 + - openmp=8.0.1=0 + - zlib=1.2.11=h516909a_1006 diff --git a/workflow/rules/analysis.smk b/workflow/rules/analysis.smk index 99d2309287578ead4942af804e1d4c6daa2e6f59..5e9f027b0f043209cc72786fd8746763d46643a3 100644 --- a/workflow/rules/analysis.smk +++ b/workflow/rules/analysis.smk @@ -84,7 +84,7 @@ rule analysis_cdhit: tool2="|".join(ASSEMBLERS) threads: 1 # TODO conda: - os.path.join(ENV_DIR, "cd-hit.yaml") + os.path.join(ENV_DIR, "cdhit.yaml") message: "CD-HIT: {input}" shell: