Merge requests · ESB / ONT_pilot_gitlab

Merge trains

config file updates with GTDBTK data paths

!34 · created Apr 22, 2020 by Susheel Busi
- Merged
- 1
updated Apr 22, 2020
updated with working GTDBTK paths and commands

!33 · created Apr 22, 2020 by Susheel Busi
- Merged
updated Apr 22, 2020
possible final Snakefile for metaspades with WORKING gtdbtk

!32 · created Apr 22, 2020 by Susheel Busi
- Merged
updated Apr 22, 2020
Writing CheckM output to file

!31 · created Apr 22, 2020 by Susheel Busi
- Merged
- 1
updated Apr 22, 2020
updated metaspades snakefile and cluster files with working DAS_Tool and CheckM

!30 · created Apr 21, 2020 by Susheel Busi
- Merged
- 1
updated Apr 21, 2020
CHECKM files that are required for the bin contamination checks

!29 · created Apr 21, 2020 by Susheel Busi
- Merged
- 1
updated Apr 21, 2020
updated Snakefile, cluster and config for metaT read mapping

!28 · created Apr 21, 2020 by Susheel Busi
- Merged
updated Apr 21, 2020
edited the compute genomecov time

!27 · created Apr 20, 2020 by Susheel Busi
- Merged
updated Apr 20, 2020
BINNING-snakefiles

!26 · created Apr 20, 2020 by Susheel Busi
- Merged
updated Apr 20, 2020
Work

!25 · created Apr 20, 2020 by Susheel Busi
- Merged
updated Apr 20, 2020
minor changes

!24 · created Apr 19, 2020 by Susheel Busi
- Merged
updated Apr 19, 2020
added tidyverse and cowplot

!23 · created Apr 19, 2020 by Susheel Busi
- Merged
updated Apr 19, 2020
updated R environment file

!22 · created Apr 19, 2020 by Susheel Busi
- Merged
updated Apr 19, 2020
changes to dependencies

!21 · created Apr 19, 2020 by Susheel Busi
- Merged
updated Apr 19, 2020
Major changes including plotting files

!20 · created Apr 19, 2020 by Susheel Busi
- Merged
updated Apr 19, 2020
updated Snakefile

!19 · created Apr 18, 2020 by Susheel Busi
- Merged
updated Apr 18, 2020
updated 'interactive' and 'batch' cpus to bigmem due to occupied CPUs in the other two

!18 · created Apr 16, 2020 by Susheel Busi
- Merged
updated Apr 16, 2020
updates to mmseq2 section made

!17 · created Apr 15, 2020 by Susheel Busi
- Merged
updated Apr 15, 2020
Work

!16 · created Mar 25, 2020 by Susheel Busi
- Merged
updated Mar 25, 2020
changes to mmseq2 rules

!15 · created Mar 25, 2020 by Susheel Busi Greatness achieved
- Merged
updated Mar 25, 2020