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May 27, 2020–Jun 30, 2020
Manuscript - initial version
Prepare everything relevant for the initial version of the manuscript, e.g. figures etc.
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16
- Additional LR assembler(s)
- CD-HIT: clustering FLYE against other assemblies
- Dataset ganges
- ASSEMBLER addition - OPERA-MS
- Sub-workflow: Use main pipeline in figure pipeline
- Figure: RGI
- Figure: PlasFlow
- Clean-up: data for figures
- Figure: Plasmids
- Analysis/Figure: mappability index
- Figure: DIAMOND query/subject ratio vs full/partial ORFs
- Figure: CRISPRs
- Figure: NanoStats
- Figure: Partial gene counts
- Figure: MMSEQ
- Figure: QUAST
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