Closed
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Sep 29, 2020–Dec 23, 2020
The bright future
Result of the call "ONT pilot - The bright future" from 2020.09.29
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31
- Report/Figure: saving upsetr plots
- Zymo: extra analysis
- Assembly: canu's genomeSize parameter test
- Report/Figure: RGI results
- Report/Figure: contig coverage segmentation
- Analysis: contig coverage segmentation
- Annotation: RGI: invalid character error
- Assemly: MetaSPAdes hybrid: scaffolds vs contigs
- Assembly: OPERA-MS: change CMD (output, options, tmp files)
- Workflow: mv basecalling to FAST5 workflow
- Workflow: Data download
- Analysis: Do not update DIAMOND
- Error: operams assembly using spades contigs
- Workflow: Reference-based analysis (Zymo)
- Analysis: Comparing assemblies: MashMap
- Analysis: Comparing assemblies: mummer/dnadiff
- Annotation: KEGG
- Assembly: MaSuRCA
- Assembly: Update Flye
- Dataset Rumen
- Dataset NWC
- Assembly: polishing update
- Analysis: metaT/metaG SR cov for contigs/genes
- Zymo: validate genes against ref genomes
- Figure: query vs subject coverage plot for DIAMOND hits
- Analysis: Comparing assemblies: FastANI
- Analysis: DIAMOND proteins between assemblies
- Mock: Identify/characterize genes in Flye which explain low q/s ratio in DIAMOND hits
- Dataset Aquifer
- Filter out human reads
- Link contigs between assemblies
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