home.md

@@ -2,29 +2,24 @@
 
 ## About
 
-- Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs
-- Data obtained by sequencing "generous donor B" across several runs
-- Original data prepared by Rashi (post-sequencing)
-- Initial analyses performed by CCL
+Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs.
 
 ## Important info
 
 - [Manuscript](https://docs.google.com/document/d/1TmenUZGwTGU4wIljxwxprZ5L75So8hYSYL5QMzSH9_M/edit?usp=sharing)
-- [The origins of the study](ONT_pilot_w_GDB_samples)
-  - TODO: consider to put relevant information in separate pages
+- [How to run the pipeline](XXX)
 
 *NOTE: For further notes, e.g. preprocessing of raw reads, create a new page and add a link here*
 
-## Data
+## Datasets
 
-- Metagenomic sequencing
-  - Fecal sample from "generous donor B"
-  - Short reads (Illumina) (SR)
-  - Long reads (ONT) (LR)
-- Meta-omics
-  - metagenomics (metaG)
-  - metatrscriptomics (metaT)
-  - metaproteomics (metaP)
+Datsets analyzed in this study
+
+- [Dataset GDB](Dataset-GDB)
+  - [The origins of the study](ONT_pilot_w_GDB_samples)
+  - Data obtained by sequencing "generous donor B" across several runs
+  - Original data prepared by Rashi (post-sequencing)
+  - Initial analyses performed by CCL
 
 ## Goal