This repository contains the code to replicate the results presented in the paper titled "Mechanistic multiscale modelling of energy metabolism in human astrocytes indicates morphological effects in Alzheimer's Disease". [ Reference Farina et al. DOI: https://doi.org/10.1101/2022.07.21.500921 ]

To run Experiment 1 and Experiment 2, it is required to have Python 3.9.2 and Fenics 2019.1.0 (2019). While Experiment 3 requires Python 2.7.6, Fenics 1.5 (2005) and the CutFEM library [Burman et al. 2015]. The astrocytic images ready to be used in Experiment 3 code can be found in the following repository: https://owncloud.lcsb.uni.lu/s/GU19CSszjbkhQ8D accesible by emailing alexander.skupin@uni.lu

For more information please contact the author: Sofia Farina