From 14dea16ec3015b1d21b9aa92d8042b650d3fea5c Mon Sep 17 00:00:00 2001
From: Shaman <shaman.narayanasamy@uni.lu>
Date: Tue, 14 Apr 2015 14:36:18 +0200
Subject: [PATCH] Dunno
---
rules/Analysis/MGMT.rules | 3 ---
1 file changed, 3 deletions(-)
diff --git a/rules/Analysis/MGMT.rules b/rules/Analysis/MGMT.rules
index a4207d1..71932b2 100644
--- a/rules/Analysis/MGMT.rules
+++ b/rules/Analysis/MGMT.rules
@@ -131,7 +131,6 @@ rule ANALYSIS_MG_VARIANT_CALLING:
### run_mpileup {input[0]} {input[1]} $VCF_MPU
samtools mpileup -uf {input[0]} {input[1]} | bcftools view -vcg - > $VCF_MPU
- wait
bgzip -c $VCF_MPU > $VCF_MPU.gz
tabix -f -p vcf $VCF_MPU.gz
@@ -145,8 +144,6 @@ rule ANALYSIS_MG_VARIANT_CALLING:
bgzip -c $VCF_PLT > $VCF_PLT.gz
tabix -f -p vcf $VCF_PLT.gz
-
-
### "Merging outputs "
## Must remove colons from the contig names in upstream steps. Unable to merge the variants
--
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