From 30dcd4b2a1718e57c16abde6dc8a996d2ee7fdbb Mon Sep 17 00:00:00 2001
From: Yohan Jarosz <yohanjarosz@yahoo.fr>
Date: Wed, 19 Aug 2015 12:15:35 +0200
Subject: [PATCH] debug some errors
---
IMP | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/IMP b/IMP
index 4fa01b7..3930f4b 100755
--- a/IMP
+++ b/IMP
@@ -148,8 +148,11 @@ def run(args):
# if --enter flag is specified, change the command
if args['--enter']:
cmd += ['/bin/bash']
-
- cmd = ' '.join(cmd) + format_command(' '.join(args['COMMANDS']), '/output')
+ cmd = ' '.join(cmd)
+ else:
+ if not args['COMMANDS']:
+ args['COMMANDS'] = 'snakemake ALL'
+ cmd = ' '.join(cmd) + format_command(' '.join(args['COMMANDS']), '/output')
print("Executing", '"', cmd, '"')
subprocess.call(cmd, shell=True)
--
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