diff --git a/rules/Analysis/MGMT.rules b/rules/Analysis/MGMT.rules index 4e55e22902d133286cabc501eeaa2365160e2b8d..fbdc22a23af761b199ff2587523132a748a8b23a 100644 --- a/rules/Analysis/MGMT.rules +++ b/rules/Analysis/MGMT.rules @@ -620,18 +620,18 @@ rule RENAME_STAT_OUTPUT: preprocessed_mg('R2', dir=AN_OUT + '/stats/MG') + '_fastqc.html', preprocessed_mg('SE', dir=AN_OUT + '/stats/MG') + '_fastqc.html' output: - "stats/MT/MT.R1_preprocessed_fastqc.zip", - "stats/MT/MT.R2_preprocessed_fastqc.zip", - "stats/MT/MT.SE_preprocessed_fastqc.zip", - "stats/MT/MT.R1_preprocessed_fastqc.html", - "stats/MT/MT.R2_preprocessed_fastqc.html", - "stats/MT/MT.SE_preprocessed_fastqc.html", - "stats/MG/MG.R1_preprocessed_fastqc.zip", - "stats/MG/MG.R2_preprocessed_fastqc.zip", - "stats/MG/MG.SE_preprocessed_fastqc.zip", - "stats/MG/MG.R1_preprocessed_fastqc.html", - "stats/MG/MG.R2_preprocessed_fastqc.html", - "stats/MG/MG.SE_preprocessed_fastqc.html" + "{AN_OUT}/stats/MT/MT.R1_preprocessed_fastqc.zip", + "{AN_OUT}/stats/MT/MT.R2_preprocessed_fastqc.zip", + "{AN_OUT}/stats/MT/MT.SE_preprocessed_fastqc.zip", + "{AN_OUT}/stats/MT/MT.R1_preprocessed_fastqc.html", + "{AN_OUT}/stats/MT/MT.R2_preprocessed_fastqc.html", + "{AN_OUT}/stats/MT/MT.SE_preprocessed_fastqc.html", + "{AN_OUT}/stats/MG/MG.R1_preprocessed_fastqc.zip", + "{AN_OUT}/stats/MG/MG.R2_preprocessed_fastqc.zip", + "{AN_OUT}/stats/MG/MG.SE_preprocessed_fastqc.zip", + "{AN_OUT}/stats/MG/MG.R1_preprocessed_fastqc.html", + "{AN_OUT}/stats/MG/MG.R2_preprocessed_fastqc.html", + "{AN_OUT}/stats/MG/MG.SE_preprocessed_fastqc.html" run: for index, _file in enumerate(input): shell("mv %s %s" % (_file, output[index]))