diff --git a/rules/Preprocessing/MG.rules b/rules/Preprocessing/MG.rules index 593ecefecd3caa8979a8524c7bb94e4290580da4..7b509d0ca2695f88ec23f0ea1534200893ccb240 100644 --- a/rules/Preprocessing/MG.rules +++ b/rules/Preprocessing/MG.rules @@ -69,7 +69,7 @@ rule PREPROCESSING_MG_TRIM: "%s/benchmarks/PREPROCESSING_MG_TRIM.json" % P_OUT -rule PREPROCESSING_MG_CONCAT_TRIMMED_SE: +rule PREPROCESSING_MG_CAT_TRIMMED_SE: log: P_LOG input: @@ -81,7 +81,7 @@ rule PREPROCESSING_MG_CONCAT_TRIMMED_SE: shell: "cat {input[0]} {input[1]} > {output}" benchmark: - "%s/benchmarks/PREPROCESSING_MG_CONCAT_TRIMMED_SE.json" % P_OUT + "%s/benchmarks/PREPROCESSING_MG_CAT_TRIMMED_SE.json" % P_OUT rule PREPROCESSING_MG_PREPROCESSED_QUALITY_STATS: diff --git a/rules/Preprocessing/MT.rules b/rules/Preprocessing/MT.rules index 12ee894fabb6ea402e4ff644a264f8fa200514e7..57ebf1deaecd364475be011ec4419e56e3094929 100644 --- a/rules/Preprocessing/MT.rules +++ b/rules/Preprocessing/MT.rules @@ -8,11 +8,11 @@ rule PREPROCESSING_MT_GET_FILES: run: prepare_input_files(input, 'MT') -rule PREPROCESSING_MT_FILES_STATISTICS: +rule PREPROCESSING_MT_QUALITY_STATS: log: P_LOG benchmark: - "%s/benchmarks/PREPROCESSING_MT_FILES_STATISTICS.json" % P_OUT + "%s/benchmarks/PREPROCESSING_MT_QUALITY_STATS.json" % P_OUT input: expand('{dir}/{raw}', raw=['MT.R1.fq', 'MT.R2.fq'], dir=P_OUT) output: @@ -49,11 +49,11 @@ rule PREPROCESSING_MT_TRIM: "%s/benchmarks/PREPROCESSING_MT_TRIM.json" % P_OUT -rule PREPROCESSING_MT_CONCAT_TRIMMED_SE: +rule PREPROCESSING_MT_CAT_TRIMMED_SE: log: P_LOG benchmark: - "%s/benchmarks/PREPROCESSING_MT_CONCAT_TRIMMED_SE.json" % P_OUT + "%s/benchmarks/PREPROCESSING_MT_CAT_TRIMMED_SE.json" % P_OUT input: expand('{dir}/{trim}', trim=[ 'MT.SE1.trimmed.fq', @@ -65,11 +65,11 @@ rule PREPROCESSING_MT_CONCAT_TRIMMED_SE: "cat {input[0]} {input[1]} > {output}" -rule PREPROCESSING_MT_PREPROCESSED_FILES_STATISTICS: +rule PREPROCESSING_MT_PREPROCESSED_QUALITY_STATS: log: P_LOG benchmark: - "%s/benchmarks/PREPROCESSING_MT_PREPROCESSED_FILES_STATISTICS.json" % P_OUT + "%s/benchmarks/PREPROCESSING_MT_PREPROCESSED_QUALITY_STATS.json" % P_OUT input: expand('{dir}/{trim}', trim=[ 'MT.R1.trimmed.fq',