From 9b7e6164338c28c4ff0cf8f8ac450b3e240c093b Mon Sep 17 00:00:00 2001
From: Yohan Jarosz <yohanjarosz@yahoo.fr>
Date: Mon, 1 Jun 2015 17:24:18 +0200
Subject: [PATCH] set output names
---
rules/Util.rules | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/rules/Util.rules b/rules/Util.rules
index 12880b1..8a78977 100644
--- a/rules/Util.rules
+++ b/rules/Util.rules
@@ -226,14 +226,15 @@ rule _DOWNLOAD_KEGG_INFORMATION:
benchmark:
"%s/benchmarks/DOWNLOAD_KEGG_INFORMATION.json" % U_OUT
output:
- "%s/ec2pathway.txt" % DBPATH
+ "%s/ec2pathway.txt" % DBPATH,
+ "%s/pathway2hierarchy.txt" % DBPATH
shell:
"""
wget --no-check-certificate {config[kegg][db_ec2pthy]} -O {DBPATH}/ec2pathway.txt.tmp
- grep "path:ec" {DBPATH}/ec2pathway.txt.tmp | sed -e 's/path:ec//g' | sed -e 's/ec://g' > {DBPATH}/ec2pathway.txt
+ grep "path:ec" {DBPATH}/ec2pathway.txt.tmp | sed -e 's/path:ec//g' | sed -e 's/ec://g' > {output[0]}
rm {DBPATH}/ec2pathway.txt.tmp
wget --no-check-certificate {config[kegg][db_hierarchy]} -O {DBPATH}/pathway2hierarchy.txt.tmp
- cat {DBPATH}/pathway2hierarchy.txt.tmp | sed -e 's/path:map//g' > {DBPATH}/pathway2hierarchy.txt
+ cat {DBPATH}/pathway2hierarchy.txt.tmp | sed -e 's/path:map//g' > {output[1]}
rm {DBPATH}/pathway2hierarchy.txt.tmp
"""
--
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