From a4339b6169a7659386782a913f0fd5b9358aa9f0 Mon Sep 17 00:00:00 2001
From: Yohan Jarosz <yohanjarosz@yahoo.fr>
Date: Fri, 17 Jul 2015 14:23:46 +0200
Subject: [PATCH] add shlex
---
IMP | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/IMP b/IMP
index 8956d35..af73117 100755
--- a/IMP
+++ b/IMP
@@ -76,7 +76,7 @@ def init(args):
'-v %s:/databases' % db_path, container_name, 'snakemake -s /home/imp/integrated-metaomic-pipeline/init.rule'
]
print("Executing", '"', ' '.join(cmd), '"')
- subprocess.call(cmd)
+ subprocess.call(shlex.split(' '.join(cmd))
def run(args):
--
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