diff --git a/Snakefile b/Snakefile index e9e5244f2f6ca3651a4fae889d13802721dcd91e..86a6259825140c31904b57e7809827eefecb5f39 100644 --- a/Snakefile +++ b/Snakefile @@ -57,8 +57,8 @@ MEMCORE = os.environ.get("MEMCORE", config['memory_per_core_gb']) # temporary directory will be stored inside the OUTPUTDIR directory # unless a absolute path is set TMPDIR = os.environ.get("TMPDIR", config['tmp_dir']) -if not os.path.isabs(TMP_DIR): - TMPDIR = os.path.join(OUTPUTDIR, TMP_DIR) +if not os.path.isabs(TMPDIR): + TMPDIR = os.path.join(OUTPUTDIR, TMPDIR) def prepare_environment(stepname):