diff --git a/rules/Analysis/MGMT.rules b/rules/Analysis/MGMT.rules index 0c158ac27c53e35c3ebb28f78ecfb7e4377ee0a9..4e55e22902d133286cabc501eeaa2365160e2b8d 100644 --- a/rules/Analysis/MGMT.rules +++ b/rules/Analysis/MGMT.rules @@ -612,14 +612,26 @@ rule RENAME_STAT_OUTPUT: preprocessed_mt('SE', dir=AN_OUT + '/stats/MT') + '_fastqc.zip', preprocessed_mt('R1', dir=AN_OUT + '/stats/MT') + '_fastqc.html', preprocessed_mt('R2', dir=AN_OUT + '/stats/MT') + '_fastqc.html', - preprocessed_mt('SE', dir=AN_OUT + '/stats/MT') + '_fastqc.html' + preprocessed_mt('SE', dir=AN_OUT + '/stats/MT') + '_fastqc.html', + preprocessed_mg('R1', dir=AN_OUT + '/stats/MG') + '_fastqc.zip', + preprocessed_mg('R2', dir=AN_OUT + '/stats/MG') + '_fastqc.zip', + preprocessed_mg('SE', dir=AN_OUT + '/stats/MG') + '_fastqc.zip', + preprocessed_mg('R1', dir=AN_OUT + '/stats/MG') + '_fastqc.html', + preprocessed_mg('R2', dir=AN_OUT + '/stats/MG') + '_fastqc.html', + preprocessed_mg('SE', dir=AN_OUT + '/stats/MG') + '_fastqc.html' output: "stats/MT/MT.R1_preprocessed_fastqc.zip", "stats/MT/MT.R2_preprocessed_fastqc.zip", "stats/MT/MT.SE_preprocessed_fastqc.zip", "stats/MT/MT.R1_preprocessed_fastqc.html", "stats/MT/MT.R2_preprocessed_fastqc.html", - "stats/MT/MT.SE_preprocessed_fastqc.html" + "stats/MT/MT.SE_preprocessed_fastqc.html", + "stats/MG/MG.R1_preprocessed_fastqc.zip", + "stats/MG/MG.R2_preprocessed_fastqc.zip", + "stats/MG/MG.SE_preprocessed_fastqc.zip", + "stats/MG/MG.R1_preprocessed_fastqc.html", + "stats/MG/MG.R2_preprocessed_fastqc.html", + "stats/MG/MG.SE_preprocessed_fastqc.html" run: for index, _file in enumerate(input): shell("mv %s %s" % (_file, output[index]))