From d6b9cb47f6dc188e7bad351f03cd846daff186a6 Mon Sep 17 00:00:00 2001
From: Yohan Jarosz <yohanjarosz@yahoo.fr>
Date: Tue, 21 Jul 2015 14:03:30 +0200
Subject: [PATCH] test renaming stat output files
---
rules/Analysis/MGMT.rules | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/rules/Analysis/MGMT.rules b/rules/Analysis/MGMT.rules
index 0c158ac..4e55e22 100644
--- a/rules/Analysis/MGMT.rules
+++ b/rules/Analysis/MGMT.rules
@@ -612,14 +612,26 @@ rule RENAME_STAT_OUTPUT:
preprocessed_mt('SE', dir=AN_OUT + '/stats/MT') + '_fastqc.zip',
preprocessed_mt('R1', dir=AN_OUT + '/stats/MT') + '_fastqc.html',
preprocessed_mt('R2', dir=AN_OUT + '/stats/MT') + '_fastqc.html',
- preprocessed_mt('SE', dir=AN_OUT + '/stats/MT') + '_fastqc.html'
+ preprocessed_mt('SE', dir=AN_OUT + '/stats/MT') + '_fastqc.html',
+ preprocessed_mg('R1', dir=AN_OUT + '/stats/MG') + '_fastqc.zip',
+ preprocessed_mg('R2', dir=AN_OUT + '/stats/MG') + '_fastqc.zip',
+ preprocessed_mg('SE', dir=AN_OUT + '/stats/MG') + '_fastqc.zip',
+ preprocessed_mg('R1', dir=AN_OUT + '/stats/MG') + '_fastqc.html',
+ preprocessed_mg('R2', dir=AN_OUT + '/stats/MG') + '_fastqc.html',
+ preprocessed_mg('SE', dir=AN_OUT + '/stats/MG') + '_fastqc.html'
output:
"stats/MT/MT.R1_preprocessed_fastqc.zip",
"stats/MT/MT.R2_preprocessed_fastqc.zip",
"stats/MT/MT.SE_preprocessed_fastqc.zip",
"stats/MT/MT.R1_preprocessed_fastqc.html",
"stats/MT/MT.R2_preprocessed_fastqc.html",
- "stats/MT/MT.SE_preprocessed_fastqc.html"
+ "stats/MT/MT.SE_preprocessed_fastqc.html",
+ "stats/MG/MG.R1_preprocessed_fastqc.zip",
+ "stats/MG/MG.R2_preprocessed_fastqc.zip",
+ "stats/MG/MG.SE_preprocessed_fastqc.zip",
+ "stats/MG/MG.R1_preprocessed_fastqc.html",
+ "stats/MG/MG.R2_preprocessed_fastqc.html",
+ "stats/MG/MG.SE_preprocessed_fastqc.html"
run:
for index, _file in enumerate(input):
shell("mv %s %s" % (_file, output[index]))
--
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