From d7e0a11f04edd25c371898f8bb3656ba762817a5 Mon Sep 17 00:00:00 2001
From: Yohan Jarosz <yohanjarosz@yahoo.fr>
Date: Mon, 24 Aug 2015 15:28:47 +0200
Subject: [PATCH] perform trim on uniq files
---
rules/Preprocessing/MG.rules | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rules/Preprocessing/MG.rules b/rules/Preprocessing/MG.rules
index 27930bf..d74f2b3 100644
--- a/rules/Preprocessing/MG.rules
+++ b/rules/Preprocessing/MG.rules
@@ -29,7 +29,7 @@ rule PREPROCESSING_MG_TRIM:
log:
P_LOG
input:
- expand('{dir}/{uniq}', uniq=['MG.R1.fq', 'MG.R2.fq'], dir=P_OUT),
+ expand('{dir}/{uniq}', uniq=['MG.R1.uniq.fq', 'MG.R2.uniq.fq'], dir=P_OUT),
DBPATH + "/adapters/adapters.done"
output:
expand('{dir}/{trim}', trim=[
--
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