diff --git a/rules/Analysis/MGMT.rules b/rules/Analysis/MGMT.rules index fbdc22a23af761b199ff2587523132a748a8b23a..767cbbdbb0560d79e1efddc1a55b9306728c42bd 100644 --- a/rules/Analysis/MGMT.rules +++ b/rules/Analysis/MGMT.rules @@ -620,18 +620,18 @@ rule RENAME_STAT_OUTPUT: preprocessed_mg('R2', dir=AN_OUT + '/stats/MG') + '_fastqc.html', preprocessed_mg('SE', dir=AN_OUT + '/stats/MG') + '_fastqc.html' output: - "{AN_OUT}/stats/MT/MT.R1_preprocessed_fastqc.zip", - "{AN_OUT}/stats/MT/MT.R2_preprocessed_fastqc.zip", - "{AN_OUT}/stats/MT/MT.SE_preprocessed_fastqc.zip", - "{AN_OUT}/stats/MT/MT.R1_preprocessed_fastqc.html", - "{AN_OUT}/stats/MT/MT.R2_preprocessed_fastqc.html", - "{AN_OUT}/stats/MT/MT.SE_preprocessed_fastqc.html", - "{AN_OUT}/stats/MG/MG.R1_preprocessed_fastqc.zip", - "{AN_OUT}/stats/MG/MG.R2_preprocessed_fastqc.zip", - "{AN_OUT}/stats/MG/MG.SE_preprocessed_fastqc.zip", - "{AN_OUT}/stats/MG/MG.R1_preprocessed_fastqc.html", - "{AN_OUT}/stats/MG/MG.R2_preprocessed_fastqc.html", - "{AN_OUT}/stats/MG/MG.SE_preprocessed_fastqc.html" + "%s/stats/MT/MT.R1_preprocessed_fastqc.zip" % AN_OUT, + "%s/stats/MT/MT.R2_preprocessed_fastqc.zip" % AN_OUT, + "%s/stats/MT/MT.SE_preprocessed_fastqc.zip" % AN_OUT, + "%s/stats/MT/MT.R1_preprocessed_fastqc.html" % AN_OUT, + "%s/stats/MT/MT.R2_preprocessed_fastqc.html" % AN_OUT, + "%s/stats/MT/MT.SE_preprocessed_fastqc.html" % AN_OUT, + "%s/stats/MG/MG.R1_preprocessed_fastqc.zip" % AN_OUT, + "%s/stats/MG/MG.R2_preprocessed_fastqc.zip" % AN_OUT, + "%s/stats/MG/MG.SE_preprocessed_fastqc.zip" % AN_OUT, + "%s/stats/MG/MG.R1_preprocessed_fastqc.html" % AN_OUT, + "%s/stats/MG/MG.R2_preprocessed_fastqc.html" % AN_OUT, + "%s/stats/MG/MG.SE_preprocessed_fastqc.html" % AN_OUT run: for index, _file in enumerate(input): shell("mv %s %s" % (_file, output[index]))