From f4f90cc51118ea586aad0f2e326a5078a208d036 Mon Sep 17 00:00:00 2001
From: Shaman Narayanasamy <shaman.narayanasamy@uni.lu>
Date: Tue, 21 Jul 2015 15:40:50 +0200
Subject: [PATCH] Correction of krona plot command
---
rules/Analysis/MGMT.rules | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/rules/Analysis/MGMT.rules b/rules/Analysis/MGMT.rules
index 4e55e22..40fb107 100644
--- a/rules/Analysis/MGMT.rules
+++ b/rules/Analysis/MGMT.rules
@@ -539,7 +539,7 @@ rule ANALYSIS_KRONA_PLOT_MG:
echo {input}
echo {output[0]}
python {SRCDIR}/genes.to.kronaTable.py -i {input[0]} -m {input[1]} -H {input[2]} -c {input[3]} -L {input[4]} -o {output[0]}
- ktImportText -o {output[1]} {output[0]}
+ ktImportText -o {output[1]} {output[0]} -a
"""
rule ANALYSIS_KRONA_PLOT_MT:
--
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