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IMP
IMP3
Commits
2f5170b1
Commit
2f5170b1
authored
Aug 31, 2021
by
Anna Buschart
Browse files
Delete stats.smk
parent
ff543bd7
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#46327
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workflow/rules/Multi/Collate/stats.smk
workflow/rules/Multi/Collate/stats.smk
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workflow/rules/Multi/Collate/stats.smk
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ff543bd7
rule collate_stats:
input:
expand("{raw_directory}/Stats/all_stats.tsv", raw_directory=samples.path[samples.stats == 1])
output:
report("Collection/multi_stats.tsv",category="Collection"),
"Collection/multi_stats.RDS"
threads: 1
resources:
runtime = "12:00:00",
mem = MEMCORE
params:
samples = samples.loc[samples.stats == 1,"sample"]
log: "logs/collate_stats.log"
message: 'collate_stats: stats from ' + " ".join(samples.loc[samples.stats == 1,"sample"])+ '.'
threads: 1
conda: ENVDIR + "/IMP_multi.yaml"
script:
SRCDIR + "/multi_collect_stats.R"
localrules: ctrl_stats_collation
rule ctrl_stats_collation:
input:
"Collection/multi_stats.tsv"
output:
touch("status/stats.collated")
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