Delete Dereplicate.smk

workflow/rules/modules/multi/Dereplicate.smk

-binctrl = []
-if config['dereplication']['simple_derep']:
-    include:
-        "../../Multi/Dereplicate/dRep.simple.smk"
-    include:
-            "../../Multi/Dereplicate/dRep_sum.simple.smk"
-    binctrl.append("Dereplication/dereplicated_bin_stats.tsv")
-if config['dereplication']['cross_mapping_rebinning']['do']:
-    include:
-        "../../Multi/Dereplicate/cross_mapping.smk"
-    include:
-        "../../Multi/Dereplicate/MetaBAT.smk"
-    include:
-        "../../Multi/Dereplicate/MaxBin.smk"
-    include:
-        "../../Multi/Dereplicate/dastool.smk"
-    include:
-        "../../Multi/Dereplicate/grid.smk"
-    include:
-        "../../Multi/Dereplicate/dRep.multi.smk"
-    binctrl.append("Dereplication/rebinned_bin_stats.tsv")
-    if config['dereplication']['GTDBtk']:
-        include:
-            "../../Multi/Dereplicate/gtdbtk_multi.smk"
-    else:
-        include:
-            "../../Multi/Dereplicate/dRep_sum.multi.smk"
-
-
-# master command
-rule all_derep:
-    input:
-        binctrl
-    output:
-        touch('status/dereplicate.done')
-
-