Delete features.smk

workflow/rules/Multi/Collate/features.smk

-def getFeats(wildcards):
-    all=expand("{raw_directory}/Analysis/annotation/{type}.{db}.counts.tsv",raw_directory=samples.loc[[a and b for a,b in zip(samples[wildcards.db] == 1, samples[wildcards.type] == 1)],"path"].tolist(),type=wildcards.type,db=wildcards.db)
-    return all
-
-rule collate_featureCounts:
-    input:
-        getFeats
-    output:
-        "Collection/multi_{type}.{db}.tsv",
-        "Collection/multi_{type}.{db}.RDS"
-    threads: 1
-    resources:
-        runtime = "12:00:00",
-        mem = MEMCORE
-    params:
-        samples = lambda wildcards: samples.loc[[a and b for a,b in zip(samples[wildcards.db] == 1, samples[wildcards.type] == 1)],"sample"].tolist()
-    log: "logs/collate_featureCounts_{type}.{db}.log"
-    message: 'collate_featureCounts: collecting {wildcards.db} {wildcards.type} data.'
-    threads: 1
-    conda: ENVDIR + "/IMP_multi.yaml"
-    script:
-        SRCDIR + "/multi_collect_featureCounts.R"
-
-localrules:  ctrl_featureCounts_collation
-
-rule ctrl_featureCounts_collation:
-    input:
-        expand("Collection/multi_{type}.{db}.tsv",db=config['hmm_DBs'].split(),type=TYPES)
-    output:
-        touch("status/features.collated")