Configuration: configs, profiles and launchers
Follow the recommendations from snakemake
and the best practices to update and restructure the current configuration setup:
-
snakemake
config- move runtime specific configuration to
snakemake
profile
- move runtime specific configuration to
-
snakemake
profile- to set default values for command line options
-
slurm
config- (cluster configuration has been officially deprecated)
- incl. in
snakemake
profile
-
shell-variables config- will be part of
snakemake
profile
- will be part of
-
launcher scripts- all parameters should be given via
snakemake
profiles
- all parameters should be given via