From 04a6b489d015b307042f6554310cee24e18d1dd1 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Sun, 24 Jul 2011 20:17:44 -0400
Subject: [PATCH] GFF can't have 0-length features.
---
src/utils/bedFile/bedFile.h | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/utils/bedFile/bedFile.h b/src/utils/bedFile/bedFile.h
index b009aae8..72ff0e1e 100644
--- a/src/utils/bedFile/bedFile.h
+++ b/src/utils/bedFile/bedFile.h
@@ -718,10 +718,10 @@ private:
bed.otherFields.push_back(lineVector[8]); // add GFF "group". unused in BED
// handle starts == end (e.g., insertions in reference genome)
- if (bed.start == bed.end) {
- bed.end++;
- bed.zeroLength = true;
- }
+ // if (bed.start == bed.end) {
+ // bed.end++;
+ // bed.zeroLength = true;
+ // }
// GFF uses 1-based starts, covert to zero-based
bed.start--;
}
--
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