From 1ff78fa4b4b49df530d9f124890b8a9f2de699f6 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Mon, 3 May 2010 22:46:32 -0400
Subject: [PATCH] Fixed bug in processing BED files in coverageBed using the
Open/Get/Close idiom. Open and Close were omitted by mistake.
---
src/coverageBed/coverageBed.cpp | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/src/coverageBed/coverageBed.cpp b/src/coverageBed/coverageBed.cpp
index 85939d67..178ff94f 100755
--- a/src/coverageBed/coverageBed.cpp
+++ b/src/coverageBed/coverageBed.cpp
@@ -58,7 +58,8 @@ void BedCoverage::CollectCoverageBed() {
int lineNum = 0; // current input line number
BED a, nullBed;
BedLineStatus bedStatus;
-
+
+ _bedA->Open();
// process each entry in A
bedStatus = _bedA->GetNextBed(a, lineNum);
while (bedStatus != BED_INVALID) {
@@ -69,6 +70,7 @@ void BedCoverage::CollectCoverageBed() {
}
bedStatus = _bedA->GetNextBed(a, lineNum);
}
+ _bedA->Close();
// report the coverage (summary or histogram) for BED B.
ReportCoverage();
--
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