From 2232f6063a2a78643f3e631b54ef32912ddc34aa Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Thu, 29 Apr 2010 16:00:25 -0400
Subject: [PATCH] Added the faulty line number when reporting malformed BED/GFF
entries to BedFile::parseLine()
---
src/utils/bedFile/bedFile.cpp | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/utils/bedFile/bedFile.cpp b/src/utils/bedFile/bedFile.cpp
index 0c243233..e8921d45 100755
--- a/src/utils/bedFile/bedFile.cpp
+++ b/src/utils/bedFile/bedFile.cpp
@@ -403,7 +403,7 @@ BedLineStatus BedFile::parseLine (BED &bed, const vector<string> &lineVector, in
}
// gripe if it's not a blank line
else if (lineVector.size() != 0) {
- cerr << "It looks as though you have less than 3 columns. Are you sure your files are tab-delimited?" << endl;
+ cerr << "It looks as though you have less than 3 columns at line: " << lineNum << ". Are you sure your files are tab-delimited?" << endl;
exit(1);
}
}
--
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