diff --git a/data/knownGene.hg18.chr21.bed b/data/knownGene.hg18.chr21.bed new file mode 100644 index 0000000000000000000000000000000000000000..94c1aab6688055677a70b5ef6e4ada830b8a621d --- /dev/null +++ b/data/knownGene.hg18.chr21.bed @@ -0,0 +1,828 @@ +chr21 9928613 10012791 uc002yip.1 0 - 9928775 9995604 0 24 298,71,93,80,106,81,62,89,82,61,65,64,100,120,162,51,60,54,54,54,54,58,109,158, 0,2082,3564,7620,9627,13341,15191,27109,27296,28194,35165,35968,36178,37925,44523,46170,52998,62332,63266,64549,66980,78302,81026,84020, +chr21 9928613 10012791 uc002yiq.1 0 - 9928775 9995604 0 23 298,71,93,80,106,81,62,89,82,61,65,64,100,120,162,51,60,54,54,54,58,109,158, 0,2082,3564,7620,9627,13341,15191,27109,27296,28194,35165,35968,36178,37925,44523,46170,52998,63266,64549,66980,78302,81026,84020, +chr21 9928613 10012791 uc002yir.1 0 - 9928775 9995604 0 22 298,71,93,80,106,81,62,89,82,61,65,64,100,120,162,51,54,54,54,58,109,158, 0,2082,3564,7620,9627,13341,15191,27109,27296,28194,35165,35968,36178,37925,44523,46170,63266,64549,66980,78302,81026,84020, +chr21 9928613 10012791 uc010gkv.1 0 - 9928775 9973168 0 19 298,71,93,80,106,81,62,89,82,61,65,64,100,120,162,51,58,109,158, 0,2082,3564,7620,9627,13341,15191,27109,27296,28194,35165,35968,36178,37925,44523,46170,78302,81026,84020, +chr21 9928613 10061300 uc002yis.1 0 - 9928613 9928613 0 33 298,71,93,80,81,62,89,82,61,65,64,100,120,162,51,60,54,54,54,58,109,120,129,213,66,130,165,197,105,102,117,120,702, 0,2082,3564,7620,13341,15191,27109,27296,28194,35165,35968,36178,37925,44523,46170,52998,63266,64549,66980,78302,81026,89277,91464,104695,106174,106728,108195,108605,114070,114367,119980,122855,131985, +chr21 10042683 10120796 uc002yit.1 0 - 10071441 10120588 0 10 105,102,117,120,702,115,172,163,101,223, 0,297,5910,8785,17915,26668,28637,37348,76733,77890, +chr21 10042683 10120808 uc002yiu.1 0 - 10080193 10120608 0 9 105,102,117,702,115,172,163,101,215, 0,297,5910,17915,26668,28637,37348,76733,77910, +chr21 10079666 10120808 uc002yiv.1 0 - 10081686 10120608 0 4 528,91,101,215, 0,1930,39750,40927, +chr21 10080031 10081687 uc002yiw.1 0 - 10080031 10080031 0 2 200,91, 0,1565, +chr21 10081660 10120796 uc002yix.2 0 - 10081660 10081660 0 3 27,101,223, 0,37756,38913, +chr21 13332351 13346202 uc002yiy.2 0 + 13332351 13332351 0 5 265,115,2492,65,215, 0,4342,4619,10805,13636, +chr21 13336975 13346202 uc002yiz.2 0 + 13336975 13336975 0 4 169,108,65,215, 0,2379,6181,9012, +chr21 13361138 13412440 uc002yja.2 0 + 13361189 13412250 0 3 102,118,411, 0,2228,50891, +chr21 13904368 13935777 uc002yjb.1 0 + 13904420 13935758 0 11 573,115,174,107,138,71,71,45,167,124,241, 0,4946,5220,8172,9981,12628,18205,19679,20764,29338,31168, +chr21 13944438 13944477 uc002yjc.1 0 + 13944438 13944438 0 1 39, 0, +chr21 13945076 13945106 uc002yjd.1 0 + 13945076 13945076 0 1 30, 0, +chr21 13973491 13975330 uc002yje.1 0 - 13973781 13974201 0 1 1839, 0, +chr21 14137333 14142556 uc002yjf.1 0 - 14137333 14137333 0 6 291,114,270,129,191,275, 0,880,1863,2871,3617,4948, +chr21 14200023 14200052 uc002yjg.1 0 + 14200023 14200023 0 1 29, 0, +chr21 14202070 14202096 uc002yjh.1 0 - 14202070 14202070 0 1 26, 0, +chr21 14237966 14274631 uc002yji.1 0 - 14237966 14237966 0 6 88,71,73,29,85,738, 0,1264,7292,7457,10291,35927, +chr21 14270940 14274631 uc002yjj.2 0 - 14270940 14270940 0 2 1809,738, 0,2953, +chr21 14321612 14438647 uc002yjk.2 0 + 14321612 14321612 0 3 177,195,699, 0,56529,116336, +chr21 14321612 14438730 uc002yjl.2 0 + 14321612 14321612 0 3 177,195,1030, 0,56529,116088, +chr21 14403005 14501125 uc002yjm.1 0 - 14403184 14501115 0 10 267,177,112,105,168,90,102,109,386,119, 0,35809,43759,54605,56409,57548,72944,77147,80220,98001, +chr21 14459414 14483611 uc010gkw.1 0 - 14459415 14483519 0 4 168,102,109,386, 0,16535,20738,23811, +chr21 14510336 14522564 uc002yjo.2 0 + 14510378 14521485 0 5 138,163,73,100,1493, 0,3418,4952,8293,10735, +chr21 14510336 14522564 uc002yjn.2 0 + 14518639 14521485 0 5 138,173,73,100,1493, 0,3408,4952,8293,10735, +chr21 14510336 14522564 uc002yjp.2 0 + 14518639 14521485 0 4 138,73,100,1493, 0,4952,8293,10735, +chr21 14567990 14585577 uc002yjq.1 0 + 14568283 14585568 0 5 359,62,148,143,100, 0,5797,13751,14605,17487, +chr21 14567990 14595563 uc002yjr.1 0 + 14568283 14593857 0 6 359,62,148,143,178,1934, 0,5797,13751,14605,17771,25639, +chr21 14567990 14595563 uc010gkx.1 0 + 14582733 14593857 0 5 359,148,143,178,1934, 0,13751,14605,17771,25639, +chr21 14567990 14632206 uc002yjs.2 0 + 14567990 14567990 0 14 359,62,148,143,178,147,85,67,188,1435,76,178,61,234, 0,5797,13751,14605,17771,31897,34572,34754,39145,42402,49713,62281,63381,63982, +chr21 14665307 14677380 uc002yjt.1 0 - 14667808 14677311 0 5 3169,168,214,341,94, 0,4536,7083,10087,11979, +chr21 14779419 14840535 uc002yju.1 0 - 14780103 14840453 0 8 887,151,207,152,130,150,72,139, 0,13214,15301,25082,27216,31664,35922,60977, +chr21 14779419 14840535 uc010gky.1 0 - 14780103 14840453 0 4 887,151,207,139, 0,13214,15301,60977, +chr21 14779419 14877594 uc002yjv.1 0 - 14780103 14876588 0 9 887,151,207,152,130,150,72,353,83, 0,13214,15301,25082,27216,31664,35922,96908,98092, +chr21 15117160 15151900 uc002yjw.1 0 - 15117160 15117160 0 3 1447,102,167, 0,2554,34573, +chr21 15255426 15262718 uc002yjx.1 0 - 15258907 15262384 0 1 7292, 0, +chr21 15258731 15358997 uc010gkz.1 0 - 15258907 15262384 0 4 3987,123,80,61, 0,49804,78955,100205, +chr21 16024366 16174248 uc002yjy.1 0 + 16024583 16172665 0 24 262,78,145,124,163,87,138,77,74,149,128,96,162,227,71,229,201,143,179,79,80,124,196,1756, 0,32714,35820,47727,61325,69580,74944,78632,80960,88521,93862,94789,96027,96800,100354,101224,103171,112221,134091,136089,139891,144226,147619,148126, +chr21 16024366 16174248 uc002yjz.1 0 + 16024583 16172665 0 25 262,78,145,124,163,87,138,77,74,149,128,96,162,227,71,229,201,143,96,179,79,80,124,196,1756, 0,32714,35820,47727,61325,69580,74944,78632,80960,88521,93862,94789,96027,96800,100354,101224,103171,112221,119600,134091,136089,139891,144226,147619,148126, +chr21 16024366 16174248 uc010gla.1 0 + 16024583 16172665 0 11 262,78,145,124,163,87,138,80,124,196,1756, 0,32714,35820,47727,61325,69580,74944,139891,144226,147619,148126, +chr21 16085691 16113036 uc010glb.1 0 + 16085691 16085691 0 5 163,87,138,74,149, 0,8255,13619,19635,27196, +chr21 16364712 16901413 uc002ykb.1 0 + 16365304 16365529 0 8 27,285,97,60,49,61,115,229, 0,592,111069,160534,416968,466857,523818,536472, +chr21 16364712 16901413 uc002yka.1 0 + 16365304 16365529 0 8 27,285,97,60,72,49,61,229, 0,592,111069,160534,321092,416968,466857,536472, +chr21 16365304 16365529 uc010glc.1 0 + 16365304 16365529 0 1 225, 0, +chr21 16488569 16901413 uc002ykc.1 0 + 16488613 16685848 0 6 255,60,72,49,61,229, 0,36677,197235,293111,343000,412615, +chr21 16833279 16833360 uc002ykd.1 0 + 16833279 16833279 0 1 81, 0, +chr21 16834014 16834106 uc002yke.1 0 + 16834014 16834014 0 1 92, 0, +chr21 16884427 16884516 uc002ykf.1 0 + 16884427 16884427 0 1 89, 0, +chr21 17733107 17743132 uc002ykg.1 0 + 17733107 17733107 0 4 79,170,118,79, 0,2755,5164,9946, +chr21 17807200 17859800 uc002ykh.1 0 + 17807318 17859798 0 5 161,167,205,156,184, 0,34015,38737,45964,52416, +chr21 17807200 17859800 uc010gld.1 0 + 17807318 17859798 0 4 161,167,205,184, 0,34015,38737,52416, +chr21 17807200 17859800 uc010gle.1 0 + 17807318 17859676 0 3 161,167,184, 0,34015,52416, +chr21 17807200 17861137 uc002yki.1 0 + 17807318 17859881 0 7 161,167,205,156,123,139,1521, 0,34015,38737,45964,47690,48326,52416, +chr21 17841215 17887768 uc002ykj.1 0 + 17841253 17887382 0 7 167,205,156,123,139,184,428, 0,4722,11949,13675,14311,18401,46125, +chr21 17887841 17907033 uc002ykk.1 0 - 17888281 17903333 0 5 680,208,138,181,146, 0,4964,11207,15319,19046, +chr21 17887841 17907033 uc002ykl.1 0 - 17888281 17903333 0 6 680,208,132,138,181,146, 0,4964,10492,11207,15319,19046, +chr21 18071593 18086697 uc002ykm.2 0 - 18071593 18071593 0 4 214,65,183,33, 0,8142,9622,15071, +chr21 18071593 18086697 uc002ykn.2 0 - 18071593 18071593 0 3 214,183,33, 0,9622,15071, +chr21 18083154 18113574 uc002ykq.2 0 - 18087602 18112506 0 5 4612,63,537,134,84, 0,6241,7615,29225,30336, +chr21 18083154 18113574 uc002yko.2 0 - 18087602 18112506 0 5 4615,63,537,134,84, 0,6241,7615,29225,30336, +chr21 18083154 18113574 uc002ykp.2 0 - 18087767 18112506 0 4 4615,537,134,84, 0,7615,29225,30336, +chr21 18195450 18561558 uc002ykr.1 0 + 18550740 18560226 0 7 162,181,310,158,87,103,1417, 0,15957,355246,355707,358937,361528,364691, +chr21 18211407 18561558 uc002yks.1 0 + 18550740 18560226 0 7 181,100,310,158,87,103,1417, 0,110653,339289,339750,342980,345571,348734, +chr21 18211407 18561558 uc002ykt.1 0 + 18550740 18560341 0 6 181,100,310,158,87,1417, 0,110653,339289,339750,342980,348734, +chr21 18211407 18561558 uc002yku.1 0 + 18550740 18560341 0 5 181,310,158,87,1417, 0,339289,339750,342980,348734, +chr21 18539020 18561558 uc002ykv.1 0 + 18539411 18560226 0 6 470,310,158,87,103,1417, 0,11676,12137,15367,17958,21121, +chr21 18563560 18697844 uc002ykw.1 0 - 18564156 18697810 0 25 752,140,96,182,175,50,96,133,111,141,126,90,136,151,106,150,141,107,109,132,36,152,68,131,179, 0,5824,9591,11667,24897,25230,28361,43572,45773,57059,59796,62711,72040,74133,74582,83530,84350,90384,95767,102820,109910,114254,128506,128826,134105, +chr21 18855455 19032214 uc010glf.1 0 - 18855455 18855455 0 4 425,58,174,102, 0,2048,8971,176657, +chr21 18855455 19054001 uc002ykx.2 0 - 18855455 18855455 0 4 425,94,102,39, 0,28260,176657,198507, +chr21 21036784 21097287 uc002yky.2 0 - 21036784 21036784 0 8 1238,107,130,120,126,92,197,104, 0,14715,35822,36047,38753,38974,39654,60399, +chr21 21036784 21097287 uc002ykz.2 0 - 21036784 21036784 0 8 1238,130,120,126,92,140,53,104, 0,35822,36047,38753,38974,39711,43440,60399, +chr21 21036784 21097287 uc002yla.2 0 - 21036784 21036784 0 7 1238,130,126,92,197,53,104, 0,35822,38753,38974,39654,43440,60399, +chr21 21036784 21097287 uc002ylb.2 0 - 21036784 21036784 0 7 1238,130,126,92,136,53,104, 0,35822,38753,38974,39711,43440,60399, +chr21 21036784 21097287 uc002ylc.2 0 - 21036784 21036784 0 7 1238,130,120,126,92,140,104, 0,35822,36047,38753,38974,39711,60399, +chr21 21292503 21833085 uc002yld.1 0 + 21292752 21832149 0 18 304,75,207,144,138,118,161,146,151,188,97,174,120,122,181,205,120,1048, 0,282265,285881,287956,293791,326070,337192,340076,375550,411961,420160,433795,468294,470350,478979,510539,536225,539534, +chr21 22041175 22091604 uc002yle.2 0 + 22041175 22041175 0 5 59,290,81,93,235, 0,1410,37988,39314,50194, +chr21 22303349 22392649 uc002ylf.2 0 - 22303349 22303349 0 6 199,111,216,164,58,147, 0,7140,32060,33785,87369,89153, +chr21 22392806 22410718 uc002ylg.1 0 + 22392806 22392806 0 6 100,103,56,139,135,193, 0,10834,13154,16143,16361,17719, +chr21 22462158 22462605 uc002ylh.1 0 - 22462158 22462158 0 1 447, 0, +chr21 24722924 24784492 uc002yli.1 0 + 24722924 24722924 0 6 165,181,185,119,63,2195, 0,9513,12429,13055,56883,59373, +chr21 25134734 25351923 uc002ylj.2 0 + 25134734 25134734 0 4 179,151,76,2306, 0,4229,189233,214883, +chr21 25680009 25725884 uc002ylk.1 0 - 25680009 25680009 0 5 513,93,96,244,524, 0,34881,38727,43939,45351, +chr21 25680009 25725884 uc010glg.1 0 - 25680009 25680009 0 4 513,93,244,524, 0,34881,43939,45351, +chr21 25856312 25869344 uc002ylm.2 0 + 25856312 25856312 0 3 128,85,1269, 0,7707,11763, +chr21 25856375 25869344 uc002yll.1 0 + 25856375 25856375 0 1 12969, 0, +chr21 25879838 25901672 uc002yln.1 0 - 25879933 25901658 0 11 99,89,48,154,66,113,68,100,140,207,87, 0,2045,3179,7156,8237,11646,14143,15712,18140,20793,21747, +chr21 25879838 25901672 uc002ylo.1 0 - 25879889 25901658 0 10 99,48,154,66,113,68,100,140,207,87, 0,3179,7156,8237,11646,14143,15712,18140,20793,21747, +chr21 25933459 26009106 uc002ylp.1 0 + 25934004 26008855 0 10 612,66,108,153,203,100,108,16,43,284, 0,44606,50589,54479,59400,62893,66702,70157,73063,75363, +chr21 25933459 26009106 uc002ylq.1 0 + 25933459 25933459 0 10 612,66,108,153,203,96,108,16,43,284, 0,44606,50589,54479,59400,62893,66702,70157,73063,75363, +chr21 25933459 26009106 uc002ylr.1 0 + 25934004 26008855 0 9 612,66,108,153,203,100,112,43,284, 0,44606,50589,54479,59400,62893,66702,73063,75363, +chr21 25933459 26009106 uc010glh.1 0 + 25933459 25933459 0 10 612,66,108,153,203,100,112,202,43,284, 0,44606,50589,54479,59400,62893,66702,72090,73063,75363, +chr21 25933459 26009106 uc010gli.1 0 + 25934004 26008850 0 8 612,66,108,153,203,100,112,284, 0,44606,50589,54479,59400,62893,66702,75363, +chr21 26018661 26029836 uc002yls.1 0 - 26018821 26023976 0 4 198,125,171,666, 0,746,5151,10509, +chr21 26018661 26029836 uc002ylt.1 0 - 26018821 26023976 0 4 198,125,171,168, 0,746,5151,11007, +chr21 26018661 26029836 uc002ylu.1 0 - 26018821 26023976 0 4 198,125,171,802, 0,746,5151,10373, +chr21 26018661 26029836 uc002ylv.1 0 - 26018821 26029137 0 4 198,125,171,716, 0,746,5151,10459, +chr21 26018661 26029836 uc002ylw.1 0 - 26018821 26023976 0 4 198,125,171,340, 0,746,5151,10835, +chr21 26028751 26066642 uc002ylx.2 0 + 26035780 26063414 0 10 501,103,145,85,246,195,54,141,193,3457, 0,7003,10640,14466,17419,23440,27742,29640,30025,34434, +chr21 26029199 26066642 uc002yly.2 0 + 26035780 26063414 0 10 561,103,145,85,246,195,54,141,193,3457, 0,6555,10192,14018,16971,22992,27294,29192,29577,33986, +chr21 26174731 26465003 uc002ylz.1 0 - 26175851 26464809 0 18 1222,147,101,54,222,100,129,159,75,134,57,168,203,194,113,130,168,251, 0,11173,17024,24475,31192,74043,75080,94522,95406,101796,116814,119469,141295,170455,172691,209398,231435,290021, +chr21 26174731 26465003 uc002yma.1 0 - 26175851 26464809 0 17 1222,147,101,54,222,100,129,159,75,134,168,203,194,113,130,168,251, 0,11173,17024,24475,31192,74043,75080,94522,95406,101796,119469,141295,170455,172691,209398,231435,290021, +chr21 26174731 26465003 uc002ymb.1 0 - 26175851 26464809 0 16 1222,147,101,54,222,100,129,159,75,134,203,194,113,130,168,251, 0,11173,17024,24475,31192,74043,75080,94522,95406,101796,141295,170455,172691,209398,231435,290021, +chr21 26174731 26465003 uc010glj.1 0 - 26175851 26464809 0 15 1222,147,101,54,222,100,129,159,75,134,203,194,113,130,251, 0,11173,17024,24475,31192,74043,75080,94522,95406,101796,141295,170455,172691,209398,290021, +chr21 26316026 26434649 uc010glk.1 0 - 26316027 26434383 0 6 203,194,113,130,168,308, 0,29160,31396,68103,90140,118315, +chr21 26460085 26461513 uc002ymc.1 0 - 26460085 26460085 0 1 1428, 0, +chr21 26760398 26867452 uc002ymd.1 0 - 26762690 26867130 0 4 2423,158,103,395, 0,14063,100057,106659, +chr21 26762117 26867452 uc002yme.2 0 - 26762690 26867130 0 4 707,158,103,395, 0,12344,98338,104940, +chr21 27130476 27139599 uc002ymf.1 0 - 27131768 27139144 0 9 1992,176,176,187,287,168,133,347,1185, 0,2152,3300,3588,3989,4711,5571,6052,7938, +chr21 27212111 27260703 uc002ymg.1 0 - 27218242 27260581 0 8 6699,176,176,184,284,168,133,1226, 0,11964,14082,14939,16544,25458,36817,47366, +chr21 27653075 27742769 uc002ymh.2 0 - 27653075 27653075 0 4 2271,86,43,202, 0,39594,40646,89492, +chr21 28307571 28317143 uc002ymj.2 0 + 28307571 28307571 0 2 51,257, 0,9315, +chr21 28342603 28431799 uc002ymk.1 0 + 28342603 28342603 0 5 124,220,93,395,920, 0,54136,82116,86900,88276, +chr21 28410287 28522857 uc002yml.2 0 - 28410287 28410287 0 6 3777,116,66,109,108,306, 0,47504,53980,96142,109786,112264, +chr21 28833510 28834547 uc002ymm.2 0 + 28833510 28833510 0 2 211,302, 0,735, +chr21 28833510 28834547 uc002ymn.2 0 + 28833510 28833510 0 2 567,302, 0,735, +chr21 29166383 29179564 uc002ymo.1 0 - 29170577 29179538 0 6 4301,142,84,91,87,160, 0,6001,7679,9969,10794,13021, +chr21 29166383 29179564 uc002ymp.1 0 - 29170577 29179538 0 5 4301,142,91,87,160, 0,6001,9969,10794,13021, +chr21 29166384 29179564 uc002ymq.1 0 - 29166384 29166384 0 7 548,180,142,84,91,87,160, 0,4120,6000,7678,9968,10793,13020, +chr21 29222336 29287095 uc002ymr.1 0 - 29224640 29286997 0 30 2367,168,195,221,172,187,75,238,214,145,136,143,105,160,187,145,154,240,190,42,810,136,191,174,181,53,231,99,204,140, 0,3011,4326,6965,8382,13076,15118,15523,16239,17663,18008,19320,24016,25073,28618,29188,30242,31314,32373,37721,38226,41322,42408,43127,52975,54172,56547,57994,58586,64619, +chr21 29260562 29281126 uc010gll.1 0 - 29260562 29260562 0 10 810,372,136,191,174,181,53,231,99,204, 0,1232,3096,4182,4901,14749,15946,18321,19768,20360, +chr21 29299950 29313554 uc002yms.1 0 - 29300608 29313469 0 5 893,363,68,227,152, 0,2002,2481,2636,13452, +chr21 29299950 29313554 uc002ymt.1 0 - 29300608 29302793 0 6 893,363,68,227,98,152, 0,2002,2481,2636,3836,13452, +chr21 29299950 29313554 uc002ymu.1 0 - 29299950 29299950 0 4 893,363,227,152, 0,2002,2636,13452, +chr21 29299950 29313554 uc002ymv.1 0 - 29300608 29302553 0 4 893,363,382,152, 0,2002,2481,13452, +chr21 29318808 29348678 uc002ymw.1 0 + 29322105 29348379 0 19 161,63,102,179,104,104,188,96,131,88,79,92,57,177,655,95,87,157,421, 0,1092,3256,5978,10220,11654,12659,13718,14409,14864,15992,17396,17855,18806,22050,24144,25475,29185,29449, +chr21 29318808 29348678 uc002ymy.1 0 + 29322105 29348379 0 18 161,102,179,104,104,188,96,131,88,79,92,57,177,655,95,87,157,421, 0,3256,5978,10220,11654,12659,13718,14409,14864,15992,17396,17855,18806,22050,24144,25475,29185,29449, +chr21 29318808 29348678 uc002ymx.1 0 + 29322105 29348379 0 18 161,102,179,104,104,185,96,131,88,79,92,57,177,655,95,87,157,421, 0,3256,5978,10220,11654,12662,13718,14409,14864,15992,17396,17855,18806,22050,24144,25475,29185,29449, +chr21 29350518 29357059 uc002ymz.1 0 - 29350666 29356379 0 5 226,120,165,72,740, 0,4214,4926,5169,5801, +chr21 29350518 29367827 uc002yna.1 0 - 29350666 29363692 0 15 226,120,165,72,116,88,67,179,138,62,181,150,80,91,130, 0,4214,4926,5169,5801,6001,6163,7025,8641,10389,10564,11229,13096,13920,17179, +chr21 29350518 29367881 uc002ynb.1 0 - 29350666 29367782 0 15 226,120,165,72,116,88,67,179,138,62,181,150,80,91,159, 0,4214,4926,5169,5801,6001,6163,7025,8641,10389,10564,11229,13096,13920,17204, +chr21 29350518 29367881 uc002ync.1 0 - 29350666 29367782 0 15 226,120,165,72,116,88,67,179,138,62,174,154,80,91,159, 0,4214,4926,5169,5801,6001,6163,7025,8641,10389,10564,11225,13096,13920,17204, +chr21 29350518 29367881 uc010glm.1 0 - 29350666 29367782 0 14 226,120,165,72,116,88,67,179,138,62,154,80,91,159, 0,4214,4926,5169,5801,6001,6163,7025,8641,10389,11225,13096,13920,17204, +chr21 29371824 29470073 uc002ynd.1 0 + 29371824 29371824 0 10 81,105,76,94,143,129,109,62,116,1170, 0,8180,13868,14035,14806,53162,55673,71556,82308,97079, +chr21 29371824 29470073 uc010gln.1 0 + 29371824 29371824 0 9 81,105,76,94,143,109,62,116,1170, 0,8180,13868,14035,14806,55673,71556,82308,97079, +chr21 29371824 29470073 uc002yne.1 0 + 29380052 29469084 0 8 81,105,76,94,143,62,116,1170, 0,8180,13868,14035,14806,71556,82308,97079, +chr21 29374743 29470073 uc002ynf.1 0 + 29380052 29469084 0 9 157,72,105,76,94,143,62,116,1170, 0,4520,5261,10949,11116,11887,68637,79389,94160, +chr21 29416245 29470073 uc010glo.1 0 + 29454165 29469084 0 4 160,62,116,1170, 0,27135,37887,52658, +chr21 29424835 29470073 uc002yng.1 0 + 29427536 29469084 0 5 280,109,62,116,1170, 0,2662,18545,29297,44068, +chr21 29439770 29470073 uc010glp.1 0 + 29439770 29439770 0 4 129,62,116,1170, 0,3610,14362,29133, +chr21 29487671 29582396 uc002ynh.2 0 + 29487671 29487671 0 4 231,146,66,221, 0,635,35481,94504, +chr21 29487685 29582396 uc002yni.2 0 + 29487685 29487685 0 2 767,221, 0,94490, +chr21 29593090 29640340 uc002ynj.1 0 + 29615472 29637025 0 5 55,294,1335,207,3750, 0,22322,27160,30588,43500, +chr21 29593607 29640340 uc002ynk.1 0 + 29615472 29637025 0 5 183,294,1335,207,3750, 0,21805,26643,30071,42983, +chr21 29599430 29656086 uc002ynl.1 0 + 29615472 29645921 0 8 84,294,1335,207,180,85,213,343, 0,15982,20820,24248,46395,47340,55792,56313, +chr21 29831124 30234153 uc002ynn.1 0 - 29831421 30233689 0 16 453,251,226,218,119,224,204,114,108,144,174,54,182,258,168,582, 0,18119,24691,40030,44491,50432,51905,54178,61896,105892,114184,117876,136049,152794,156961,402447, +chr21 29847736 30234153 uc002yno.1 0 - 29847746 30233689 0 17 160,251,226,218,119,224,204,114,45,108,144,174,54,182,258,168,582, 0,1507,8079,23418,27879,33820,35293,37566,42980,45284,89280,97572,101264,119437,136182,140349,385835, +chr21 29875615 30234153 uc010glq.1 0 - 29875616 30233689 0 10 119,224,204,114,108,144,174,54,182,582, 0,5941,7414,9687,17405,61401,69693,73385,91558,357956, +chr21 29890230 29924938 uc002ynp.1 0 + 29890230 29890230 0 3 739,125,209, 0,1530,34499, +chr21 29892990 30234153 uc002ynr.2 0 - 29892993 30233689 0 8 138,144,174,54,182,258,168,582, 0,44026,52318,56010,74183,90928,95095,340581, +chr21 30043127 30058182 uc002yns.1 0 + 30043127 30043127 0 3 208,180,415, 0,9893,14640, +chr21 30460131 30460806 uc002ynt.1 0 - 30460131 30460806 0 1 675, 0, +chr21 30508200 30510189 uc002ynu.1 0 - 30509436 30510114 0 1 1989, 0, +chr21 30575497 30577147 uc002ynv.1 0 - 30576356 30577121 0 1 1650, 0, +chr21 30583333 30583703 uc010glr.1 0 - 30583370 30583679 0 1 370, 0, +chr21 30613320 30614478 uc002ynw.1 0 - 30613591 30614224 0 1 1158, 0, +chr21 30631201 30631883 uc002ynx.1 0 - 30631233 30631857 0 1 682, 0, +chr21 30642587 30642795 uc002yny.1 0 - 30642597 30642795 0 1 208, 0, +chr21 30665579 30666428 uc002ynz.2 0 - 30665874 30666402 0 1 849, 0, +chr21 30690262 30691009 uc002yoa.1 0 + 30690275 30690794 0 1 747, 0, +chr21 30719581 30720101 uc002yob.1 0 - 30719582 30720101 0 1 520, 0, +chr21 30724464 30724947 uc002yoc.1 0 + 30724464 30724947 0 1 483, 0, +chr21 30734516 30734969 uc002yod.1 0 + 30734516 30734930 0 1 453, 0, +chr21 30774234 30774507 uc002yoe.1 0 - 30774234 30774507 0 1 273, 0, +chr21 30781379 30781538 uc002yof.1 0 - 30781379 30781538 0 1 159, 0, +chr21 30785652 30786146 uc002yog.1 0 - 30785900 30786146 0 1 494, 0, +chr21 30791044 30791299 uc002yoh.1 0 - 30791044 30791299 0 1 255, 0, +chr21 30796060 30796279 uc002yoi.1 0 - 30796060 30796279 0 1 219, 0, +chr21 30835724 30836052 uc002yok.1 0 - 30835846 30836023 0 1 328, 0, +chr21 30855287 30855479 uc002yol.1 0 - 30855287 30855479 0 1 192, 0, +chr21 30886629 30887245 uc002yom.1 0 + 30886635 30886968 0 1 616, 0, +chr21 30892875 30893064 uc002yon.1 0 - 30892875 30893064 0 1 189, 0, +chr21 30895310 30895457 uc002yoo.1 0 + 30895310 30895457 0 1 147, 0, +chr21 30907875 30908094 uc002yop.1 0 - 30907878 30908094 0 1 219, 0, +chr21 30910644 30910815 uc002yoq.1 0 + 30910644 30910815 0 1 171, 0, +chr21 30929453 30929651 uc002yor.1 0 + 30929453 30929651 0 1 198, 0, +chr21 30937053 30937326 uc010gls.1 0 + 30937078 30937213 0 1 273, 0, +chr21 31041139 31041391 uc002yos.1 0 - 31041139 31041391 0 1 252, 0, +chr21 31049327 31049567 uc002yot.1 0 - 31049327 31049567 0 1 240, 0, +chr21 31106885 31107441 uc002you.1 0 - 31107217 31107409 0 1 556, 0, +chr21 31174834 31175745 uc002yov.1 0 - 31175222 31175714 0 1 911, 0, +chr21 31332348 31332666 uc010glt.1 0 - 31332441 31332633 0 1 318, 0, +chr21 31412606 31853161 uc002yow.1 0 - 31414556 31561159 0 29 2420,173,88,103,59,109,119,180,109,126,69,180,104,225,87,82,105,171,75,147,186,225,173,448,974,177,180,53,51, 0,6104,8647,11795,12472,17515,22700,22907,28477,34218,34648,35829,46543,64002,68581,76804,84488,91625,94978,99133,104986,107306,127068,133322,147590,158312,220822,345560,440504, +chr21 31506817 31854161 uc002yox.1 0 - 31507554 31546163 0 9 842,147,186,225,173,448,180,53,59, 0,4922,10775,13095,32857,39111,126611,251349,347285, +chr21 31853428 31854471 uc002yoy.2 0 + 31853444 31854300 0 2 351,271, 0,772, +chr21 31948741 31953684 uc002yoz.1 0 - 31948741 31948741 0 3 870,294,104, 0,3376,4839, +chr21 31953805 31963114 uc002ypa.1 0 + 31953953 31962762 0 5 220,97,70,118,460, 0,4168,6827,7636,8849, +chr21 31953849 31963114 uc002ypb.1 0 + 31953953 31962762 0 5 119,97,70,118,460, 0,4124,6783,7592,8805, +chr21 31953892 31963114 uc002ypc.1 0 + 31953892 31953892 0 5 1000,97,70,118,460, 0,4081,6740,7549,8762, +chr21 31965417 32026133 uc002ypd.1 0 - 31965582 32025876 0 20 1121,192,87,166,158,157,114,101,191,86,168,109,182,177,143,136,162,45,84,287, 0,13815,14164,14334,17073,19563,20583,21115,22060,22970,23579,24879,25335,29761,30542,31010,32531,34189,35040,60429, +chr21 31965417 32026133 uc002ype.1 0 - 31965582 32025876 0 20 1121,126,87,166,158,157,114,101,191,86,168,109,182,177,143,136,162,45,84,287, 0,13815,14164,14334,17073,19563,20583,21115,22060,22970,23579,24879,25335,29761,30542,31010,32531,34189,35040,60429, +chr21 31965417 32026133 uc010glu.1 0 - 31965582 32025876 0 19 1121,192,87,166,158,157,114,101,191,86,168,109,182,177,143,136,162,84,287, 0,13815,14164,14334,17073,19563,20583,21115,22060,22970,23579,24879,25335,29761,30542,31010,32531,35040,60429, +chr21 31978178 31996102 uc002ypf.1 0 - 31979158 31990386 0 14 1246,87,166,158,157,114,101,191,86,168,109,168,177,143, 0,1403,1573,4312,6802,7822,8354,9299,10209,10818,12118,12574,17000,17781, +chr21 31994942 32026133 uc002ypg.1 0 - 31995013 32025876 0 7 413,143,136,162,45,84,287, 0,1017,1485,3006,4664,5515,30904, +chr21 32167498 32298248 uc002yph.1 0 + 32167858 32293368 0 11 621,293,56,136,128,136,163,84,48,181,5539, 0,51152,66849,72720,85527,94934,101239,110211,116814,122453,125211, +chr21 32562400 32573247 uc002ypi.1 0 - 32563218 32573196 0 5 899,97,123,67,385, 0,1488,2188,6611,10462, +chr21 32585994 32606470 uc002ypj.1 0 + 32593153 32606178 0 5 37,140,116,100,605, 0,1180,7149,14827,19871, +chr21 32585994 32606470 uc010glv.1 0 + 32585994 32585994 0 4 37,140,100,605, 0,1180,14827,19871, +chr21 32585994 32608965 uc002ypk.1 0 + 32593153 32608835 0 5 37,140,116,100,233, 0,1180,7149,14827,22738, +chr21 32593031 32606470 uc002ypl.1 0 + 32593153 32606178 0 3 228,100,605, 0,7790,12834, +chr21 32600647 32602916 uc002ypm.2 0 - 32600647 32600647 0 2 361,216, 0,2053, +chr21 32607648 32687021 uc002ypn.1 0 - 32609099 32678641 0 39 1633,600,242,198,110,144,107,112,161,103,172,64,111,194,59,187,202,856,180,219,197,171,139,117,120,113,117,130,174,138,196,125,126,86,97,133,152,140,73, 0,2999,4209,5749,7063,8333,9010,11023,11761,19848,20694,23625,23935,25238,27997,31101,31905,33487,35835,37235,39241,40464,41390,41980,44068,46327,47538,48423,49687,53149,54934,59038,60178,61929,64976,69953,70844,72076,79300, +chr21 32671366 32671502 uc002ypo.1 0 - 32671366 32671366 0 1 136, 0, +chr21 32706622 32762234 uc002ypq.1 0 + 32707032 32762080 0 4 570,197,124,360, 0,40868,45153,55252, +chr21 32706622 32809568 uc002ypr.1 0 + 32707032 32809371 0 8 570,197,124,153,144,81,90,574, 0,40868,45153,55252,82585,88973,91484,102372, +chr21 32706622 32809568 uc002yps.1 0 + 32706622 32706622 0 7 570,124,153,144,81,90,574, 0,45153,55252,82585,88973,91484,102372, +chr21 32706622 32809568 uc010glw.1 0 + 32707032 32809371 0 8 570,197,124,153,144,72,90,574, 0,40868,45153,55252,82585,88973,91484,102372, +chr21 32706622 32809568 uc002ypt.1 0 + 32706622 32706622 0 6 570,153,144,124,90,574, 0,55252,82585,88973,91484,102372, +chr21 32746363 32809568 uc002ypu.1 0 + 32747615 32809371 0 7 1324,124,153,144,81,90,574, 0,5412,15511,42844,49232,51743,62631, +chr21 32866419 32870062 uc002ypv.1 0 - 32866419 32866419 0 4 357,85,29,1306, 0,1045,1857,2337, +chr21 32870732 32879714 uc002ypw.2 0 - 32870954 32878485 0 5 372,138,216,145,113, 0,2142,5648,7609,8869, +chr21 32876380 32901897 uc002ypx.1 0 - 32876380 32901883 0 3 216,159,68, 0,21925,25449, +chr21 32876380 32906537 uc002ypy.1 0 - 32876380 32906424 0 7 216,96,132,159,68,168,252, 0,20072,20961,21925,25449,27638,29905, +chr21 32876380 32906537 uc002ypz.1 0 - 32876380 32906424 0 6 216,132,159,68,168,252, 0,20961,21925,25449,27638,29905, +chr21 32895854 32898694 uc002yqa.2 0 - 32897269 32898482 0 2 1619,389, 0,2451, +chr21 32895854 32906537 uc002yqb.2 0 - 32897269 32906424 0 5 1619,159,68,168,252, 0,2451,5975,8164,10431, +chr21 32895977 32906537 uc002yqc.1 0 - 32896043 32906424 0 7 177,96,132,159,68,168,252, 0,475,1364,2328,5852,8041,10308, +chr21 32895977 32906537 uc002yqd.1 0 - 32896043 32906424 0 6 177,132,159,68,168,252, 0,1364,2328,5852,8041,10308, +chr21 32895977 32906537 uc010glx.1 0 - 32896043 32904096 0 6 177,96,132,159,168,252, 0,475,1364,2328,8041,10308, +chr21 32922943 32936331 uc002yqe.2 0 - 32925175 32925772 0 6 3039,24,218,109,71,56, 0,6098,10145,10908,13133,13332, +chr21 32922943 33022105 uc002yqf.1 0 - 32929044 33021077 0 32 3039,24,218,109,71,39,39,144,210,163,79,216,118,157,159,193,141,85,192,24,157,153,82,170,97,62,84,226,268,87,146,87, 0,6098,10145,10908,13133,13332,16205,16883,17630,21421,24525,27924,28240,28953,36150,37180,37670,41525,44577,47569,49882,52733,55275,56985,58215,59543,65465,66294,71075,73198,98010,99075, +chr21 32922943 33022105 uc002yqg.1 0 - 32925175 33021077 0 28 3039,218,109,71,144,210,163,79,216,118,157,159,193,141,85,192,166,153,82,170,97,62,84,226,268,87,146,87, 0,10145,10908,13133,16883,17630,21421,24525,27924,28240,28953,36150,37180,37670,41525,44577,49882,52733,55275,56985,58215,59543,65465,66294,71075,73198,98010,99075, +chr21 32922943 33022148 uc002yqh.1 0 - 32925175 33021077 0 32 3039,218,109,71,39,48,39,144,210,163,79,216,118,157,159,193,141,85,192,24,157,153,82,170,97,62,84,226,268,87,146,21, 0,10145,10908,13133,13332,14647,16205,16883,17630,21421,24525,27924,28240,28953,36150,37180,37670,41525,44577,47569,49882,52733,55275,56985,58215,59543,65465,66294,71075,73198,98010,99184, +chr21 32922943 33022148 uc002yqi.1 0 - 32929044 33021077 0 33 3039,24,218,109,71,39,48,39,144,210,163,79,216,118,157,159,193,141,85,192,24,157,153,82,170,97,62,84,226,268,87,146,21, 0,6098,10145,10908,13133,13332,14647,16205,16883,17630,21421,24525,27924,28240,28953,36150,37180,37670,41525,44577,47569,49882,52733,55275,56985,58215,59543,65465,66294,71075,73198,98010,99184, +chr21 33022296 33027093 uc002yqj.1 0 + 33022296 33022296 0 2 2547,393, 0,4404, +chr21 33022296 33037303 uc002yqk.2 0 + 33022296 33022296 0 4 2547,69,70,860, 0,5474,10157,14147, +chr21 33028080 33046092 uc002yql.1 0 - 33029131 33045434 0 10 1169,155,147,67,77,122,145,200,116,792, 0,3355,4274,9349,9779,10893,11675,14600,17018,17220, +chr21 33028080 33050976 uc002yqm.1 0 - 33029131 33045389 0 11 1169,155,147,67,77,122,145,200,116,100,1582, 0,3355,4274,9349,9779,10893,11675,14600,17018,17220,21314, +chr21 33028080 33066040 uc002yqn.1 0 - 33029131 33065850 0 18 1169,155,147,67,77,122,145,200,116,100,124,190,218,104,222,177,129,533, 0,3355,4274,9349,9779,10893,11675,14600,17018,17220,21331,25181,25878,27160,28197,30449,35915,37427, +chr21 33028080 33066040 uc002yqo.1 0 - 33028080 33028080 0 18 1169,155,147,67,77,122,145,200,116,100,141,190,218,104,222,177,129,533, 0,3355,4274,9349,9779,10893,11675,14600,17018,17220,21314,25181,25878,27160,28197,30449,35915,37427, +chr21 33035520 33066040 uc002yqp.1 0 - 33035690 33065850 0 16 284,67,77,122,145,200,116,100,124,190,218,104,222,177,129,533, 0,1909,2339,3453,4235,7160,9578,9780,13891,17741,18438,19720,20757,23009,28475,29987, +chr21 33049593 33066040 uc002yqq.1 0 - 33050523 33065850 0 8 957,190,218,104,222,177,129,533, 0,3668,4365,5647,6684,8936,14402,15914, +chr21 33053537 33066040 uc002yqr.2 0 - 33053954 33065850 0 6 639,104,222,177,129,533, 0,1703,2740,4992,10458,11970, +chr21 33066281 33091884 uc002yqs.2 0 + 33066281 33066281 0 4 209,123,90,766, 0,12697,16512,24837, +chr21 33066306 33091884 uc002yqt.2 0 + 33066306 33066306 0 2 148,766, 0,24812, +chr21 33066387 33091884 uc002yqu.2 0 + 33066387 33066387 0 4 115,123,90,766, 0,12591,16406,24731, +chr21 33084854 33107876 uc002yqv.1 0 - 33087858 33088602 0 3 3812,81,105, 0,19899,22917, +chr21 33084854 33107876 uc010gly.1 0 - 33087858 33088602 0 4 3812,75,81,105, 0,16967,19899,22917, +chr21 33084854 33107876 uc002yqw.1 0 - 33087858 33088602 0 2 3812,105, 0,22917, +chr21 33087858 33088602 uc010glz.1 0 - 33087858 33088602 0 1 744, 0, +chr21 33320108 33323370 uc002yqx.1 0 + 33321040 33322012 0 2 96,2392, 0,870, +chr21 33321040 33322012 uc002yqy.2 0 + 33321040 33322012 0 1 972, 0, +chr21 33364442 33366596 uc002yqz.1 0 + 33364470 33365238 0 1 2154, 0, +chr21 33459786 33464411 uc002yra.1 0 - 33459786 33459786 0 4 81,139,138,96, 0,2831,4084,4529, +chr21 33524100 33556932 uc002yrb.1 0 + 33536097 33556891 0 9 291,92,42,124,173,146,169,131,197, 0,11960,13747,15025,16792,18783,22736,30671,32635, +chr21 33524100 33556932 uc002yrc.1 0 + 33536097 33556891 0 9 291,138,42,124,173,146,169,131,197, 0,11914,13747,15025,16792,18783,22736,30671,32635, +chr21 33524100 33558690 uc002yrd.1 0 + 33536097 33557675 0 9 291,92,42,124,173,146,169,131,1723, 0,11960,13747,15025,16792,18783,22736,30671,32867, +chr21 33524100 33558690 uc002yre.1 0 + 33536097 33557675 0 9 291,138,42,124,173,146,169,131,1723, 0,11914,13747,15025,16792,18783,22736,30671,32867, +chr21 33524100 33558690 uc002yrf.1 0 + 33536097 33556978 0 8 291,138,42,124,173,146,169,1723, 0,11914,13747,15025,16792,18783,22736,32867, +chr21 33539667 33556932 uc002yrg.1 0 + 33541064 33556891 0 6 313,173,146,169,131,197, 0,1225,3216,7169,15104,17068, +chr21 33542883 33577416 uc002yrh.1 0 + 33542939 33577415 0 6 146,169,124,158,167,148, 0,3953,19685,27887,31043,34385, +chr21 33542883 33577416 uc002yri.1 0 + 33546973 33577415 0 5 146,169,158,167,148, 0,3953,27887,31043,34385, +chr21 33558047 33560435 uc002yrj.1 0 - 33558047 33558047 0 2 2030,198, 0,2190, +chr21 33560541 33591390 uc002yrk.1 0 + 33560640 33590532 0 7 148,124,158,167,148,158,1032, 0,2027,10229,13385,16727,21737,29817, +chr21 33562102 33591390 uc002yrl.1 0 + 33562513 33590532 0 6 590,158,167,148,158,1032, 0,8668,11824,15166,20176,28256, +chr21 33619083 33653998 uc002yrn.1 0 + 33619230 33649725 0 11 223,124,176,155,142,115,200,155,151,146,4507, 0,10616,16091,18360,18627,20338,24183,24481,27850,28730,30408, +chr21 33697071 33731698 uc002yrp.2 0 + 33697719 33731139 0 7 721,133,206,149,160,158,694, 0,11993,18585,23989,29282,29819,33933, +chr21 33697071 33731698 uc002yrq.2 0 + 33697719 33731139 0 8 721,57,133,206,149,160,158,694, 0,7940,11993,18585,23989,29282,29819,33933, +chr21 33697071 33731698 uc010gma.1 0 + 33715687 33731139 0 8 721,52,133,206,149,160,158,694, 0,7945,11993,18585,23989,29282,29819,33933, +chr21 33709055 33731698 uc002yrr.2 0 + 33715687 33731139 0 6 142,206,149,160,158,694, 0,6601,12005,17298,17835,21949, +chr21 33726662 33774151 uc002yrs.1 0 - 33726662 33726662 0 9 317,84,2082,58,93,68,113,140,137, 0,6728,16296,23241,27927,32856,34524,36301,47352, +chr21 33742958 33774151 uc002yrt.1 0 - 33744994 33763062 0 7 2082,58,93,68,113,140,137, 0,6945,11631,16560,18228,20005,31056, +chr21 33742958 33774151 uc010gmb.1 0 - 33742958 33742958 0 8 2082,58,94,93,68,113,140,137, 0,6945,7222,11631,16560,18228,20005,31056, +chr21 33782107 33785660 uc002yrv.1 0 - 33782403 33783570 0 2 1494,418, 0,3135, +chr21 33782107 33785893 uc002yrw.1 0 - 33782403 33783570 0 2 1494,115, 0,3671, +chr21 33782403 33783570 uc010gmc.1 0 - 33782403 33783570 0 1 1167, 0, +chr21 33798141 33836286 uc002yrx.1 0 - 33798300 33833491 0 22 351,116,142,131,138,207,153,252,199,110,95,232,169,86,88,126,69,112,175,96,186,46, 0,447,1596,2009,5818,7287,13024,13392,16399,16941,18223,20804,24201,24553,24884,26793,27523,28379,30613,31259,35205,38099, +chr21 33798141 33836995 uc002yry.1 0 - 33798300 33833491 0 22 351,116,142,131,138,207,153,252,199,110,95,232,169,86,88,126,69,112,175,96,186,160, 0,447,1596,2009,5818,7287,13024,13392,16399,16941,18223,20804,24201,24553,24884,26793,27523,28379,30613,31259,35205,38694, +chr21 33798141 33837006 uc002yrz.1 0 - 33798300 33833491 0 22 351,116,142,131,138,207,153,252,199,110,95,232,169,86,88,126,69,112,175,96,153,244, 0,447,1596,2009,5818,7287,13024,13392,16399,16941,18223,20804,24201,24553,24884,26793,27523,28379,30613,31259,35205,38621, +chr21 33798141 33837065 uc010gmd.1 0 - 33798300 33822394 0 22 351,116,142,131,138,207,153,252,199,110,95,232,169,90,88,126,69,112,175,96,186,299, 0,447,1596,2009,5818,7287,13024,13392,16399,16941,18223,20804,24201,24549,24884,26793,27523,28379,30613,31259,35205,38625, +chr21 33818186 33836286 uc002ysa.1 0 - 33818941 33833491 0 11 991,169,86,88,126,69,112,175,96,186,46, 0,4156,4508,4839,6748,7478,8334,10568,11214,15160,18054, +chr21 33837219 33851844 uc002ysb.1 0 + 33837268 33851727 0 5 126,167,5916,161,123, 0,3169,6432,14112,14502, +chr21 33837219 33854843 uc002ysc.1 0 + 33837268 33854307 0 7 126,167,5916,161,147,189,791, 0,3169,6432,14112,16186,16543,16833, +chr21 33837219 33871654 uc002ysd.2 0 + 33846434 33870752 0 13 126,167,1814,3144,161,147,189,111,117,148,72,116,1061, 0,3169,6432,9204,14112,16186,16543,24113,25927,30264,32552,32734,33374, +chr21 33837219 33871682 uc002yse.1 0 + 33837268 33870600 0 12 126,167,5916,161,147,189,111,117,148,72,116,1142, 0,3169,6432,14112,16186,16543,24113,25927,30264,32552,32734,33321, +chr21 33837219 33871682 uc002ysf.1 0 + 33837268 33870600 0 11 126,167,161,147,189,111,117,148,72,116,1142, 0,3169,14112,16186,16543,24113,25927,30264,32552,32734,33321, +chr21 33846423 33861642 uc002ysg.2 0 + 33846434 33861524 0 5 3144,161,147,189,310, 0,4908,6982,7339,14909, +chr21 33866544 33871654 uc002ysh.2 0 + 33867519 33870752 0 5 262,148,72,116,1061, 0,939,3227,3409,4049, +chr21 33869652 33880357 uc002ysi.1 0 - 33872482 33878830 0 9 332,146,213,199,105,82,179,137,204, 0,2822,3873,5825,6474,6688,8011,9113,10501, +chr21 33872080 33881778 uc002ysj.1 0 - 33872482 33876176 0 8 540,213,199,105,82,179,204,81, 0,1445,3397,4046,4260,6685,8073,9617, +chr21 33872080 33883137 uc010gme.1 0 - 33872482 33882817 0 9 540,213,199,105,82,179,179,204,641, 0,1445,3397,4046,4260,5583,6685,8073,10416, +chr21 33872080 33883137 uc002ysk.1 0 - 33872482 33882817 0 10 540,213,199,105,82,179,179,204,81,641, 0,1445,3397,4046,4260,5583,6685,8073,9617,10416, +chr21 33872080 33883137 uc002ysl.1 0 - 33872482 33876176 0 9 540,213,199,105,82,179,83,81,641, 0,1445,3397,4046,4260,6685,8073,9617,10416, +chr21 33872080 33889790 uc002ysm.1 0 - 33872482 33882817 0 13 540,213,199,105,82,179,179,204,81,641,81,210,259, 0,1445,3397,4046,4260,5583,6685,8073,9617,10416,11936,13257,17451, +chr21 33878765 34206573 uc002ysn.1 0 - 33878767 34201565 0 5 179,204,113,130,111, 0,1388,322749,324490,327697, +chr21 33883517 33936030 uc010gmf.1 0 - 33883997 33925727 0 13 580,46,106,122,99,112,134,69,45,73,78,72,174, 0,1820,6389,7938,9808,12892,14062,24196,27364,32654,35341,42144,52339, +chr21 33888837 33889792 uc002ysp.2 0 - 33888837 33888837 0 1 955, 0, +chr21 33889437 33891577 uc002ysq.2 0 - 33889437 33889437 0 2 267,122, 0,2018, +chr21 33889906 33936030 uc002ysr.1 0 - 33889907 33935420 0 12 106,122,99,112,134,69,45,73,78,72,127,174, 0,1549,3419,6503,7673,17807,20975,26265,28952,35755,45448,45950, +chr21 33889906 33936030 uc002yss.1 0 - 33889906 33889906 0 11 106,122,136,112,134,69,45,73,78,72,174, 0,1549,3419,6503,7673,17807,20975,26265,28952,35755,45950, +chr21 33889906 33936030 uc002yst.1 0 - 33889906 33889906 0 10 106,122,136,112,134,69,73,78,72,174, 0,1549,3419,6503,7673,17807,26265,28952,35755,45950, +chr21 33910469 33936030 uc002ysu.2 0 - 33910699 33925727 0 6 310,45,73,78,72,174, 0,412,5702,8389,15192,25387, +chr21 33933921 33936030 uc002ysv.2 0 - 33933921 33933921 0 3 443,127,174, 0,1433,1935, +chr21 33936653 34132672 uc002yth.2 0 + 33936653 33936653 0 28 236,60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,46,122,118,192,1512, 0,76318,78699,80109,92565,107664,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,175787,176761,184338,187144,191827,193961,194507, +chr21 33936653 34132672 uc002ysz.1 0 + 34013003 34131162 0 27 236,60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,122,118,192,1512, 0,76318,78699,80109,92565,107664,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,175787,176761,187144,191827,193961,194507, +chr21 33936653 34132672 uc010gmg.1 0 + 34013003 34131162 0 27 236,60,93,64,161,69,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,122,118,192,1512, 0,76318,78699,80109,92565,107775,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,175787,176761,187144,191827,193961,194507, +chr21 33936653 34132672 uc010gmh.1 0 + 33936653 33936653 0 26 236,60,93,64,161,69,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,83,122,118,192,1512, 0,76318,78699,80109,92565,107775,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,176761,187144,191827,193961,194507, +chr21 33936653 34132672 uc002ysw.1 0 + 34013003 34131162 0 30 236,60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,15,248,160,206,83,167,46,122,118,192,1512, 0,76318,78699,80109,92565,107664,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,159950,168495,171433,175787,176761,181007,184338,187144,191827,193961,194507, +chr21 33936653 34132672 uc010gmi.1 0 + 34013003 34131162 0 30 236,60,93,64,161,69,97,101,64,138,116,263,150,141,88,140,128,230,122,15,248,160,206,83,167,46,122,118,192,1512, 0,76318,78699,80109,92565,107775,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,159950,168495,171433,175787,176761,181007,184338,187144,191827,193961,194507, +chr21 33936653 34132672 uc010gmj.1 0 + 34044319 34131162 0 28 236,60,93,64,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,167,46,122,118,192,1512, 0,76318,78699,80109,107664,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,175787,176761,181007,184338,187144,191827,193961,194507, +chr21 33936653 34132672 uc002ysy.1 0 + 34013003 34131162 0 29 236,60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,167,46,122,118,192,1512, 0,76318,78699,80109,92565,107664,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,175787,176761,181007,184338,187144,191827,193961,194507, +chr21 33936653 34132672 uc002ysx.1 0 + 34013003 34131162 0 29 236,60,93,64,161,69,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,167,46,122,118,192,1512, 0,76318,78699,80109,92565,107775,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,175787,176761,181007,184338,187144,191827,193961,194507, +chr21 33936653 34183479 uc002yta.1 0 + 34013003 34182474 0 40 236,60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,15,248,160,206,83,167,46,122,118,192,122,107,184,99,168,213,122,83,84,174,1154, 0,76318,78699,80109,92565,107664,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,159950,168495,171433,175787,176761,181007,184338,187144,191827,193961,214256,216206,222671,224753,232874,239763,241070,242561,242959,243807,245672, +chr21 33936653 34183479 uc002ytb.1 0 + 34013003 34182474 0 39 236,60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,167,46,122,118,192,122,107,184,99,168,213,122,83,84,174,1154, 0,76318,78699,80109,92565,107664,109331,112818,119443,123395,125233,129581,132249,132488,138981,139514,151861,154899,157328,168495,171433,175787,176761,181007,184338,187144,191827,193961,214256,216206,222671,224753,232874,239763,241070,242561,242959,243807,245672, +chr21 34012971 34111788 uc002ytc.1 0 + 34013003 34111755 0 21 60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,384, 0,2381,3791,16247,31346,33013,36500,43125,47077,48915,53263,55931,56170,62663,63196,75543,78581,81010,92177,95115,98433, +chr21 34012971 34132672 uc002ytd.1 0 + 34012971 34012971 0 29 60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,167,46,83,122,118,192,1512, 0,2381,3791,16247,31346,33013,36500,43125,47077,48915,53263,55931,56170,62663,63196,75543,78581,81010,92177,95115,99469,100443,104689,108020,110170,110826,115509,117643,118189, +chr21 34012971 34132672 uc010gmk.1 0 + 34013003 34131162 0 27 60,93,64,161,69,97,101,64,138,116,263,150,141,88,140,128,230,122,15,248,160,206,83,122,118,192,1512, 0,2381,3791,16247,31457,33013,36500,43125,47077,48915,53263,55931,56170,62663,63196,75543,78581,81010,83632,92177,95115,99469,100443,110826,115509,117643,118189, +chr21 34012971 34132672 uc010gml.1 0 + 34012971 34012971 0 25 60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,83,122,118,192,1512, 0,2381,3791,16247,31346,33013,36500,43125,47077,48915,53263,55931,56170,62663,63196,75543,78581,81010,92177,95115,100443,110826,115509,117643,118189, +chr21 34012971 34183479 uc002ytj.2 0 + 34013003 34182474 0 37 60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,167,46,122,118,192,122,107,184,99,213,122,83,84,174,1154, 0,2381,3791,16247,31346,33013,36500,43125,47077,48915,53263,55931,56170,62663,63196,75543,78581,81010,92177,95115,99469,100443,104689,108020,110826,115509,117643,137938,139888,146353,148435,163445,164752,166243,166641,167489,169354, +chr21 34012971 34183479 uc010gmm.1 0 + 34012971 34012971 0 37 60,93,64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,248,160,206,83,46,122,118,192,122,107,184,99,168,213,122,83,84,174,1154, 0,2381,3791,16247,31346,33013,36500,43125,47077,48915,53263,55931,56170,62663,63196,75543,78581,81010,92177,95115,99469,100443,108020,110826,115509,117643,137938,139888,146353,148435,156556,163445,164752,166243,166641,167489,169354, +chr21 34016762 34132672 uc002yte.1 0 + 34029231 34131162 0 25 64,161,180,97,101,64,138,116,263,150,141,88,140,128,230,122,15,248,160,206,83,122,118,192,1512, 0,12456,27555,29222,32709,39334,43286,45124,49472,52140,52379,58872,59405,71752,74790,77219,79841,88386,91324,95678,96652,107035,111718,113852,114398, +chr21 34096603 34111788 uc002ytf.1 0 + 34096603 34096603 0 4 15,248,160,384, 0,8545,11483,14801, +chr21 34112440 34123224 uc002ytg.1 0 + 34112554 34123154 0 4 206,83,46,83, 0,974,8551,10701, +chr21 34123141 34151031 uc002yti.1 0 + 34123141 34123141 0 5 83,122,118,192,122, 0,656,5339,7473,27768, +chr21 34169527 34179696 uc002ytk.1 0 + 34169527 34169527 0 3 168,83,84, 0,9687,10085, +chr21 34169527 34180634 uc010gmn.1 0 + 34169527 34169527 0 5 168,122,83,84,174, 0,8196,9687,10085,10933, +chr21 34197626 34210028 uc002ytl.1 0 - 34197699 34209937 0 7 187,87,113,130,111,51,127, 0,482,3888,5629,8836,10997,12275, +chr21 34206462 34209898 uc002ytm.1 0 - 34206462 34206462 0 3 111,51,589, 0,2161,2847, +chr21 34225295 34265357 uc002ytn.2 0 + 34225295 34225295 0 3 621,86,1950, 0,14688,38112, +chr21 34367692 34400431 uc002yto.1 0 + 34389367 34391524 0 2 223,11400, 0,21339, +chr21 34367692 34437204 uc002ytp.2 0 + 34367870 34436770 0 3 223,140,627, 0,51818,68885, +chr21 34389367 34391524 uc002ytq.2 0 + 34389367 34391524 0 1 2157, 0, +chr21 34474917 34477415 uc002ytr.2 0 + 34474917 34474917 0 2 47,537, 0,1961, +chr21 34474917 34484090 uc002yts.1 0 + 34474917 34474917 0 2 47,1152, 0,8021, +chr21 34658192 34665310 uc002ytt.1 0 + 34664647 34665019 0 2 128,675, 0,6443, +chr21 34664647 34665019 uc010gmo.1 0 + 34664647 34665019 0 1 372, 0, +chr21 34669618 34683322 uc002ytu.2 0 + 34673673 34679810 0 4 118,89,167,526, 0,3978,10027,13178, +chr21 34669618 34696944 uc002ytv.2 0 + 34669618 34669618 0 4 118,89,189,686, 0,3978,24260,26640, +chr21 34669618 34696944 uc002ytw.2 0 + 34669618 34669618 0 5 118,89,167,189,686, 0,3978,10027,24260,26640, +chr21 34712882 34718134 uc002yty.1 0 - 34713385 34718007 0 2 916,134, 0,5118, +chr21 34740857 34749933 uc010gmp.1 0 - 34743412 34743802 0 2 2995,380, 0,8696, +chr21 34740857 34753772 uc002ytz.1 0 - 34743412 34743802 0 3 2995,83,76, 0,11964,12839, +chr21 34740857 34753772 uc010gmq.1 0 - 34743412 34743802 0 3 2995,111,76, 0,11964,12839, +chr21 34740857 34805483 uc010gmr.1 0 - 34743412 34743802 0 3 2995,111,215, 0,11964,64411, +chr21 34740857 34806443 uc002yua.1 0 - 34740857 34740857 0 4 2995,111,215,249, 0,11964,64411,65337, +chr21 34743412 34743802 uc010gms.1 0 - 34743412 34743802 0 1 390, 0, +chr21 34810653 34821131 uc002yub.1 0 - 34812251 34820917 0 4 1771,160,174,301, 0,5013,7051,10177, +chr21 34810653 34908012 uc002yuc.1 0 - 34812251 34907964 0 4 1771,160,174,57, 0,5013,7051,97302, +chr21 34810653 34908615 uc002yud.1 0 - 34812251 34817725 0 4 1771,160,174,169, 0,5013,7051,97793, +chr21 34810653 34909252 uc002yue.1 0 - 34812251 34909180 0 4 1771,160,174,324, 0,5013,7051,98275, +chr21 34963557 35012389 uc002yuf.1 0 + 34963557 35010650 0 6 1374,110,126,107,182,1901, 0,37890,38554,39310,39967,46931, +chr21 34963557 35012389 uc010gmt.1 0 + 34963557 35010650 0 7 1374,54,110,126,107,182,1901, 0,36637,37890,38554,39310,39967,46931, +chr21 35040013 35079036 uc002yug.2 0 + 35040013 35040013 0 3 170,66,2289, 0,36278,36734, +chr21 35081967 35182857 uc002yuh.1 0 - 35086301 35181279 0 6 4810,162,192,105,157,1848, 0,11500,46609,71673,92756,99042, +chr21 35081967 35182857 uc002yui.1 0 - 35086301 35181279 0 5 4810,162,105,157,1848, 0,11500,71673,92756,99042, +chr21 35081967 35343437 uc010gmu.1 0 - 35086301 35343066 0 9 4810,162,192,105,157,254,39,117,190, 0,11500,46609,71673,92756,99042,105124,261041,261280, +chr21 35081967 35343465 uc010gmv.1 0 - 35086301 35343066 0 9 4810,162,192,105,157,254,39,117,131, 0,11500,46609,71673,92756,99042,105124,261041,261367, +chr21 35081967 35343465 uc002yuj.2 0 - 35086301 35174835 0 7 4810,162,192,105,157,117,131, 0,11500,46609,71673,92756,261041,261367, +chr21 35081967 35343511 uc002yuk.2 0 - 35086301 35343066 0 8 4810,162,192,105,157,254,39,503, 0,11500,46609,71673,92756,99042,105124,261041, +chr21 35091579 35128768 uc002yul.1 0 - 35092221 35128676 0 3 680,162,192, 0,1888,36997, +chr21 35091579 35343125 uc002yum.1 0 - 35092221 35174835 0 5 680,162,105,157,117, 0,1888,62061,83144,251429, +chr21 35115443 35124138 uc002yun.1 0 - 35115443 35115443 0 2 420,120, 0,8575, +chr21 35115443 35182857 uc002yuo.1 0 - 35115834 35181279 0 5 420,192,105,157,1848, 0,13133,38197,59280,65566, +chr21 35117630 35120573 uc002yup.1 0 - 35117630 35117630 0 1 2943, 0, +chr21 35127127 35343465 uc010gmw.1 0 - 35128286 35343066 0 7 1641,105,157,254,39,117,131, 0,26513,47596,53882,59964,215881,216207, +chr21 35153500 35174880 uc002yur.1 0 - 35153500 35174835 0 2 245,157, 0,21223, +chr21 35153640 35153741 uc002yus.1 0 + 35153640 35153640 0 1 101, 0, +chr21 35181009 36278917 uc002yut.1 0 - 35181009 35181009 0 11 254,39,117,137,65,270,56,183,93,166,178, 0,6082,161999,178093,575119,693818,767978,977443,1083233,1094909,1097730, +chr21 36328708 36354789 uc002yuu.1 0 - 36328708 36328708 0 11 1420,167,124,81,82,175,430,38,96,109,275, 0,1544,3609,6034,7266,9241,11041,19042,22568,24275,25806, +chr21 36328708 36358576 uc002yuv.1 0 - 36330284 36353056 0 14 1420,167,124,81,82,175,430,89,38,96,109,275,61,195, 0,1544,3609,6034,7266,9241,11041,13767,19042,22568,24275,25806,28965,29673, +chr21 36328709 36354429 uc002yuw.1 0 - 36330284 36353056 0 10 1710,124,81,82,175,430,89,38,96,1446, 0,3608,6033,7265,9240,11040,13766,19041,22567,24274, +chr21 36328709 36354789 uc002yux.1 0 - 36330284 36351552 0 12 1710,124,81,82,175,430,89,38,96,94,158,275, 0,3608,6033,7265,9240,11040,13766,19041,22567,22842,24274,25805, +chr21 36337851 36354481 uc002yuy.1 0 - 36337926 36353056 0 7 273,430,89,38,96,158,32, 0,1898,4624,9899,13425,15132,16598, +chr21 36337851 36354481 uc002yuz.1 0 - 36337926 36351552 0 8 273,430,89,38,96,94,158,32, 0,1898,4624,9899,13425,13700,15132,16598, +chr21 36337851 36373557 uc002yva.1 0 - 36337926 36351552 0 8 273,430,89,38,96,94,109,85, 0,1898,4624,9899,13425,13700,15132,35621, +chr21 36364154 36365751 uc010gmx.1 0 + 36364283 36365365 0 2 418,634, 0,963, +chr21 36364154 36367332 uc002yvb.1 0 + 36364283 36367050 0 3 418,108,719, 0,963,2459, +chr21 36364154 36367334 uc010gmy.1 0 + 36364283 36366107 0 3 418,108,1352, 0,963,1828, +chr21 36425934 36450475 uc002yvc.1 0 - 36425934 36425934 0 4 1308,75,100,91, 0,1920,14489,24450, +chr21 36425934 36450475 uc002yvd.1 0 - 36425934 36425934 0 3 1308,100,91, 0,14489,24450, +chr21 36429132 36440730 uc002yve.1 0 + 36429360 36440680 0 3 517,108,487, 0,2860,11111, +chr21 36435563 36450475 uc002yvf.1 0 - 36435563 36435563 0 3 551,100,91, 0,4860,14821, +chr21 36458708 36588442 uc002yvg.1 0 + 36458901 36587739 0 37 53,164,182,171,190,99,124,110,115,121,120,103,192,685,272,153,101,191,1630,112,189,123,138,56,105,67,145,80,110,147,62,129,137,56,162,130,955, 0,167,34529,35790,44174,47012,47433,49540,49901,54831,58690,61024,63145,65909,68263,72721,74060,75224,80507,82976,83839,86621,89231,96136,99005,99207,105472,112480,113434,113668,115744,116942,123473,124215,124504,127563,128779, +chr21 36539215 36556078 uc002yvh.2 0 + 36539595 36554904 0 6 1630,112,189,123,138,1234, 0,2469,3332,6114,8724,15629, +chr21 36614375 36670814 uc002yvi.1 0 + 36614432 36669464 0 17 96,73,133,215,148,148,129,120,98,105,123,75,46,167,889,158,1504, 0,13438,16666,17524,18566,21191,24371,24704,29103,36412,39747,39976,41975,43885,48780,52166,54935, +chr21 36632941 36633667 uc010gmz.1 0 + 36632941 36632941 0 1 726, 0, +chr21 36679558 36710995 uc002yvj.1 0 + 36680304 36710534 0 14 61,203,133,118,104,97,85,94,70,92,142,432,95,553, 0,669,2207,6160,9156,12024,14130,17367,23370,23983,26072,27493,29904,30884, +chr21 36754789 36760595 uc002yvk.1 0 - 36755143 36755863 0 2 1155,61, 0,5745, +chr21 36754789 36774258 uc002yvl.1 0 - 36755143 36755863 0 3 1155,190,596, 0,16752,18873, +chr21 36754789 36774258 uc002yvm.1 0 - 36755143 36755863 0 2 1155,596, 0,18873, +chr21 36754789 36836768 uc002yvn.1 0 - 36755143 36755863 0 3 1155,138,36, 0,49741,81943, +chr21 36754789 36870737 uc002yvo.1 0 - 36755143 36755863 0 3 1155,138,159, 0,49741,115789, +chr21 36755143 36755863 uc010gna.1 0 - 36755143 36755863 0 1 720, 0, +chr21 36993860 37004772 uc002yvp.2 0 + 36993916 37003675 0 2 231,1435, 0,9477, +chr21 36993860 37040485 uc002yvq.1 0 + 36993916 37039444 0 10 231,83,90,109,86,200,107,148,169,1587, 0,9477,12842,20131,23355,26429,31355,42027,43697,45038, +chr21 36993860 37044088 uc002yvr.1 0 + 36993916 37042263 0 11 231,83,90,109,86,200,107,148,169,409,2253, 0,9477,12842,20131,23355,26429,31355,42027,43697,45038,47975, +chr21 37045058 37256340 uc010gnb.1 0 - 37048416 37233053 0 11 3530,214,115,161,68,272,183,944,163,955,135, 0,5654,8839,14124,16330,145971,179362,185560,187943,196444,211147, +chr21 37045058 37284373 uc002yvs.1 0 - 37048416 37233053 0 12 3530,214,115,161,68,272,183,944,163,146,135,46, 0,5654,8839,14124,16330,145971,179362,185560,187943,195120,211147,239269, +chr21 37224420 37260808 uc010gnc.1 0 - 37224420 37260808 0 5 183,944,163,135,195, 0,6198,8581,31785,36193, +chr21 37300319 37313828 uc002yvu.1 0 + 37312056 37312377 0 4 84,67,68,1785, 0,2007,7401,11724, +chr21 37300319 37313828 uc010gnd.1 0 + 37312144 37312468 0 3 84,67,1785, 0,2007,11724, +chr21 37300732 37313828 uc002yvv.1 0 + 37300942 37312377 0 4 314,67,68,1785, 0,1594,6988,11311, +chr21 37359533 37366973 uc002yvw.1 0 - 37359751 37366757 0 4 349,119,73,370, 0,1898,4188,7070, +chr21 37359533 37367328 uc002yvx.1 0 - 37359751 37366685 0 5 349,119,73,104,159, 0,1898,4188,7070,7636, +chr21 37359533 37367328 uc002yvy.1 0 - 37359751 37366318 0 6 349,119,73,166,104,159, 0,1898,4188,6781,7070,7636, +chr21 37367440 37497278 uc002yvz.1 0 + 37381427 37495745 0 46 94,155,43,151,88,54,121,86,95,63,55,163,46,124,64,61,85,135,81,113,121,123,102,93,65,137,327,252,47,57,74,165,1066,66,150,140,69,97,101,91,102,362,127,144,93,1668, 0,13976,14562,14925,15528,16962,18022,20734,22079,23310,35121,48546,49712,51348,52809,55732,59411,62109,65363,67290,71254,74210,75275,76807,77549,78622,79680,83386,86430,87533,88721,90782,92281,94286,99326,109505,112436,113779,115225,118064,118842,122405,124300,124612,126962,128170, +chr21 37367444 37438815 uc010gne.1 0 + 37381427 37438815 0 21 199,155,43,151,88,54,121,86,95,63,55,163,46,124,64,61,85,135,81,113,121, 0,13972,14558,14921,15524,16958,18018,20730,22075,23306,35117,48542,49708,51344,52805,55728,59407,62105,65359,67286,71250, +chr21 37377116 37497278 uc002ywa.1 0 + 37381427 37495745 0 46 1385,155,43,151,88,54,121,86,95,63,55,163,46,124,64,61,85,135,81,113,121,123,102,93,65,137,327,252,47,57,74,165,1066,66,150,140,69,97,101,91,102,362,127,144,93,1668, 0,4300,4886,5249,5852,7286,8346,11058,12403,13634,25445,38870,40036,41672,43133,46056,49735,52433,55687,57614,61578,64534,65599,67131,67873,68946,70004,73710,76754,77857,79045,81106,82605,84610,89650,99829,102760,104103,105549,108388,109166,112729,114624,114936,117286,118494, +chr21 37379959 37497278 uc002ywb.1 0 + 37381427 37495745 0 45 1612,43,151,88,54,121,86,95,63,55,163,46,124,64,61,85,135,81,113,121,123,102,93,65,137,327,252,47,57,74,165,1066,66,150,140,69,97,101,91,102,362,127,144,93,1668, 0,2043,2406,3009,4443,5503,8215,9560,10791,22602,36027,37193,38829,40290,43213,46892,49590,52844,54771,58735,61691,62756,64288,65030,66103,67161,70867,73911,75014,76202,78263,79762,81767,86807,96986,99917,101260,102706,105545,106323,109886,111781,112093,114443,115651, +chr21 37379959 37497278 uc010gnf.1 0 + 37389537 37495745 0 44 1612,43,151,88,54,121,95,63,55,163,46,124,64,61,85,135,81,113,121,123,102,93,65,137,327,252,47,57,74,165,1066,66,150,140,69,97,101,91,102,362,127,144,93,1668, 0,2043,2406,3009,4443,5503,9560,10791,22602,36027,37193,38829,40290,43213,46892,49590,52844,54771,58735,61691,62756,64288,65030,66103,67161,70867,73911,75014,76202,78263,79762,81767,86807,96986,99917,101260,102706,105545,106323,109886,111781,112093,114443,115651, +chr21 37401907 37497278 uc002ywc.1 0 + 37416016 37495745 0 36 709,163,46,124,64,61,85,135,81,113,121,123,102,93,65,137,327,252,47,57,74,165,1066,66,150,140,69,97,101,91,102,362,127,144,93,1668, 0,14079,15245,16881,18342,21265,24944,27642,30896,32823,36787,39743,40808,42340,43082,44155,45213,48919,51963,53066,54254,56315,57814,59819,64859,75038,77969,79312,80758,83597,84375,87938,89833,90145,92495,93703, +chr21 37450826 37480250 uc002ywd.1 0 + 37450894 37479982 0 10 252,47,57,74,165,1066,66,150,140,374, 0,3044,4147,5335,7396,8895,10900,15940,26119,29050, +chr21 37502673 37514868 uc010gng.1 0 + 37502673 37502673 0 5 42,103,58,89,460, 0,151,5593,7902,11735, +chr21 37502673 37514868 uc010gnh.1 0 + 37502673 37502673 0 4 42,103,89,460, 0,151,7902,11735, +chr21 37502673 37514868 uc010gni.1 0 + 37502673 37502673 0 4 42,103,58,460, 0,151,5593,11735, +chr21 37502673 37514868 uc010gnj.1 0 + 37502673 37502673 0 3 42,103,460, 0,151,11735, +chr21 37514496 37515910 uc010gnk.1 0 + 37514496 37514496 0 1 1414, 0, +chr21 37517595 37534810 uc010gnl.1 0 - 37519714 37534741 0 6 2202,153,151,75,150,144, 0,4229,4798,8952,15035,17071, +chr21 37517595 37561703 uc002ywf.1 0 - 37519714 37561465 0 8 2202,153,151,75,81,150,144,295, 0,4229,4798,8952,9937,15035,17071,43813, +chr21 37517595 37561703 uc010gnm.1 0 - 37517595 37517595 0 10 2202,153,151,78,483,269,81,150,144,295, 0,4229,4798,5720,8068,8952,9937,15035,17071,43813, +chr21 37517595 37561703 uc010gnn.1 0 - 37519714 37534741 0 9 2202,153,151,75,81,150,144,56,295, 0,4229,4798,8952,9937,15035,17071,43367,43813, +chr21 37661728 37767052 uc010gno.1 0 + 37661728 37661728 0 4 72,76,86,197, 0,47933,52742,105127, +chr21 37661728 37767052 uc002ywg.1 0 + 37661728 37661728 0 3 72,86,197, 0,52742,105127, +chr21 37661728 37780786 uc002ywh.1 0 + 37766932 37780785 0 5 72,197,93,189,148, 0,105127,110651,113081,118910, +chr21 37661728 37809549 uc002ywi.1 0 + 37714546 37800480 0 13 72,101,86,197,120,189,148,287,147,141,307,256,3466, 0,43013,52742,105127,110624,113081,118910,122618,125460,128561,137727,138543,144355, +chr21 37713076 37809549 uc002ywj.1 0 + 37714546 37806704 0 11 1480,197,93,189,148,287,147,141,307,125,3466, 0,53779,59303,61733,67562,71270,74112,77213,86379,87195,93007, +chr21 37714470 37809549 uc002ywk.1 0 + 37714546 37806704 0 11 86,197,120,189,148,287,147,141,307,125,3466, 0,52385,57882,60339,66168,69876,72718,75819,84985,85801,91613, +chr21 37714470 37809549 uc002ywm.1 0 + 37714546 37806127 0 10 86,197,120,189,148,287,147,141,307,3466, 0,52385,57882,60339,66168,69876,72718,75819,84985,91613, +chr21 37714470 37809549 uc002ywl.1 0 + 37714546 37800521 0 11 86,197,120,189,148,287,147,141,306,84,3466, 0,52385,57882,60339,66168,69876,72718,75819,84985,85973,91613, +chr21 37901635 37904535 uc002ywn.1 0 - 37901635 37901635 0 1 2900, 0, +chr21 37918656 38210566 uc002ywo.1 0 - 37919330 38134854 0 4 1000,921,52,510, 0,89727,216173,291400, +chr21 38348182 38415324 uc002ywp.1 0 - 38348818 38415219 0 3 763,102,233, 0,66088,66909, +chr21 38415436 38450474 uc002ywt.2 0 + 38415436 38415436 0 4 129,357,97,207, 0,839,32960,34831, +chr21 38415436 38450474 uc010gnp.1 0 + 38415436 38415436 0 4 129,100,97,207, 0,839,32960,34831, +chr21 38415436 38450474 uc010gnq.1 0 + 38415436 38415436 0 4 129,100,115,207, 0,839,32942,34831, +chr21 38415436 38450474 uc010gnr.1 0 + 38415436 38415436 0 3 129,357,207, 0,839,34831, +chr21 38415436 38450474 uc010gns.1 0 + 38415436 38415436 0 3 129,100,207, 0,839,34831, +chr21 38500119 38502606 uc010gnt.1 0 + 38500119 38500119 0 3 205,145,508, 0,316,1979, +chr21 38550533 38595616 uc002ywv.1 0 + 38593053 38594181 0 4 46,140,98,2581, 0,304,40184,42502, +chr21 38550739 38595616 uc002yww.1 0 + 38593053 38594181 0 3 238,98,2581, 0,39978,42296, +chr21 38566298 38595616 uc002ywx.1 0 + 38593053 38594181 0 3 51,98,2581, 0,24419,26737, +chr21 38567267 38569311 uc002ywy.2 0 + 38567267 38567267 0 1 2044, 0, +chr21 38593053 38594181 uc010gnu.1 0 + 38593053 38594181 0 1 1128, 0, +chr21 38661052 38955488 uc002ywz.1 0 - 38661426 38869494 0 12 388,48,57,69,72,81,204,152,218,86,102,37, 0,23734,24398,25115,33313,35296,36245,56149,78144,208403,217585,294399, +chr21 38675670 38792267 uc002yxa.1 0 - 38677194 38792174 0 10 2045,48,57,69,72,81,204,152,218,111, 0,9116,9780,10497,18695,20678,21627,41531,63526,116486, +chr21 38675670 38878739 uc010gnv.1 0 - 38677194 38717313 0 9 2045,48,57,69,81,204,152,86,102, 0,9116,9780,10497,20678,21627,41531,193785,202967, +chr21 38675670 38954461 uc010gnw.1 0 - 38677194 38869494 0 12 2045,48,57,69,72,81,204,152,218,86,102,146, 0,9116,9780,10497,18695,20678,21627,41531,63526,193785,202967,278645, +chr21 38675670 38954461 uc010gnx.1 0 - 38677194 38869494 0 11 2045,48,57,69,81,204,152,218,86,102,146, 0,9116,9780,10497,20678,21627,41531,63526,193785,202967,278645, +chr21 38675670 38955488 uc002yxb.1 0 - 38677194 38869494 0 11 2045,48,57,69,81,204,152,218,86,102,37, 0,9116,9780,10497,20678,21627,41531,63526,193785,202967,279781, +chr21 38686167 38697501 uc010gny.1 0 - 38686167 38686167 0 2 69,204, 0,11130, +chr21 38693868 38955488 uc002yxc.2 0 - 38694153 38869494 0 8 569,81,204,152,218,86,102,37, 0,2480,3429,23333,45328,175587,184769,261583, +chr21 38764567 38955488 uc010gnz.1 0 - 38764567 38764567 0 5 1306,95,86,102,37, 0,3252,104888,114070,190884, +chr21 39032820 39046051 uc010goa.1 0 - 39032820 39032820 0 4 303,99,118,51, 0,1289,7272,13180, +chr21 39032820 39067271 uc002yxd.2 0 - 39032820 39032820 0 7 303,99,185,52,118,64,29, 0,1289,1857,2294,7272,8370,34422, +chr21 39099100 39118748 uc002yxf.1 0 + 39099140 39116683 0 11 310,150,72,112,120,201,84,222,264,119,2281, 0,664,4728,7696,8966,9474,11701,13118,14196,16279,17367, +chr21 39099718 39118748 uc002yxg.1 0 + 39103828 39116683 0 10 196,72,112,120,201,84,222,264,119,2281, 0,4110,7078,8348,8856,11083,12500,13578,15661,16749, +chr21 39171084 39232223 uc002yxh.1 0 - 39172299 39172710 0 4 3082,65,56,620, 0,24610,46347,60519, +chr21 39469253 39477310 uc002yxi.1 0 - 39469385 39477181 0 7 207,137,199,63,152,107,263, 0,1977,2991,4466,4827,6314,7794, +chr21 39469253 39477310 uc002yxj.1 0 - 39469385 39477181 0 6 207,137,199,152,107,263, 0,1977,2991,4827,6314,7794, +chr21 39469253 39477310 uc010gob.1 0 - 39469385 39474212 0 6 207,137,199,63,152,263, 0,1977,2991,4466,4827,7794, +chr21 39479273 39558815 uc010goc.1 0 - 39480821 39503916 0 26 1940,918,900,168,221,167,153,144,42,73,126,132,62,112,83,125,108,126,190,95,132,94,184,186,226,129, 0,11020,13285,14741,16847,20630,24517,25308,27188,28003,29759,33051,38930,39608,43022,43834,46699,46895,51117,53001,62223,65318,70167,73009,78982,79413, +chr21 39479273 39607426 uc002yxk.1 0 - 39480821 39607287 0 42 1940,918,900,168,221,167,153,144,42,73,126,121,156,62,112,83,125,108,126,190,95,132,94,184,186,226,129,135,151,99,41,101,71,101,222,161,99,151,60,30,59,188, 0,11020,13285,14741,16847,20630,24517,25308,27188,28003,29759,32674,33027,38930,39608,43022,43834,46699,46895,51117,53001,62223,65318,70167,73009,78982,79413,84421,84805,88896,90695,91773,93265,94670,108333,110265,110787,112954,127363,127594,127763,127965, +chr21 39484017 39607426 uc002yxl.1 0 - 39490054 39607287 0 42 821,6366,900,168,221,167,153,144,42,73,126,121,156,62,112,83,125,108,126,190,95,132,94,184,186,226,129,135,151,99,41,101,71,101,222,161,99,151,60,30,59,188, 0,828,8541,9997,12103,15886,19773,20564,22444,23259,25015,27930,28283,34186,34864,38278,39090,41955,42151,46373,48257,57479,60574,65423,68265,74238,74669,79677,80061,84152,85951,87029,88521,89926,103589,105521,106043,108210,122619,122850,123019,123221, +chr21 39496120 39523232 uc010god.1 0 - 39496121 39523130 0 12 221,167,153,42,73,126,121,156,62,112,83,125, 0,3783,7670,10341,11156,12912,15827,16180,22083,22761,26175,26987, +chr21 39530390 39574044 uc010goe.1 0 - 39530390 39530390 0 15 190,95,132,94,184,186,105,129,135,151,99,41,101,71,101, 0,1884,11106,14201,19050,21892,27865,28296,33304,33688,37779,39578,40656,42148,43553, +chr21 39530390 39574044 uc010gof.1 0 - 39530390 39558799 0 15 190,95,132,94,184,186,226,34,135,151,99,41,101,71,101, 0,1884,11106,14201,19050,21892,27865,28391,33304,33688,37779,39578,40656,42148,43553, +chr21 39530390 39574044 uc010gog.1 0 - 39530390 39530390 0 15 190,95,132,94,164,186,226,129,135,151,99,41,101,71,101, 0,1884,11106,14201,19070,21892,27865,28296,33304,33688,37779,39578,40656,42148,43553, +chr21 39530390 39574044 uc010goh.1 0 - 39530390 39530390 0 14 190,95,132,94,186,226,129,135,151,99,41,101,71,101, 0,1884,11106,14201,21892,27865,28296,33304,33688,37779,39578,40656,42148,43553, +chr21 39530390 39574044 uc010goi.1 0 - 39530390 39574035 0 14 190,95,94,184,186,226,129,135,151,99,41,101,71,101, 0,1884,14201,19050,21892,27865,28296,33304,33688,37779,39578,40656,42148,43553, +chr21 39590234 39607426 uc002yxm.1 0 - 39592213 39607287 0 5 2144,60,30,59,188, 0,16402,16633,16802,17004, +chr21 39636110 39642917 uc002yxo.1 0 - 39636907 39642713 0 6 845,129,48,30,33,219, 0,2831,5977,6107,6230,6588, +chr21 39636110 39642917 uc002yxp.1 0 - 39636594 39639642 0 8 845,129,129,100,48,30,33,219, 0,2831,3515,5064,5977,6107,6230,6588, +chr21 39636110 39642917 uc002yxq.1 0 - 39636594 39639642 0 7 845,129,129,48,30,33,219, 0,2831,3515,5977,6107,6230,6588, +chr21 39636110 39643140 uc002yxr.1 0 - 39636110 39636110 0 8 845,129,1463,105,48,30,33,54, 0,2831,3515,5064,5977,6107,6230,6976, +chr21 39674139 39691486 uc002yxs.1 0 + 39674180 39690735 0 5 143,166,68,115,825, 0,10354,11425,12822,16522, +chr21 39681560 39691486 uc010goj.1 0 + 39681560 39681560 0 5 91,779,68,115,825, 0,2933,4004,5401,9101, +chr21 39681560 39691486 uc002yxt.2 0 + 39684493 39690735 0 5 91,166,68,115,825, 0,2933,4004,5401,9101, +chr21 39699639 39737997 uc002yxu.1 0 - 39699677 39722289 0 10 769,118,104,85,138,515,332,81,154,67, 0,4135,4420,5874,14862,17132,22328,23287,29576,38291, +chr21 39699639 39739529 uc002yxv.1 0 - 39699677 39722289 0 10 769,118,104,85,138,515,332,81,154,284, 0,4135,4420,5874,14862,17132,22328,23287,29576,39606, +chr21 39715354 39739601 uc002yxw.1 0 - 39716741 39722289 0 5 1932,332,81,154,81, 0,6613,7572,13861,24166, +chr21 39715354 39739601 uc002yxx.1 0 - 39716741 39717194 0 4 1932,81,67,81, 0,7572,22576,24166, +chr21 39715868 39732732 uc002yxy.2 0 - 39715868 39715868 0 4 1836,1086,81,253, 0,5345,7058,16611, +chr21 39739666 39809303 uc002yxz.1 0 + 39756269 39805572 0 7 59,186,81,93,30,130,419, 0,16504,29264,53952,63128,65810,69218, +chr21 39745649 39809303 uc002yya.1 0 + 39745703 39805572 0 7 288,186,81,93,30,130,419, 0,10521,23281,47969,57145,59827,63235, +chr21 39850238 39956685 uc002yyb.1 0 + 39954356 39955289 0 5 69,132,231,160,2329, 0,48652,89950,103311,104118, +chr21 39890946 39906618 uc010gok.1 0 - 39890946 39890946 0 3 840,83,525, 0,12433,15147, +chr21 39899406 39906618 uc002yyd.2 0 - 39899406 39899406 0 3 738,83,525, 0,3973,6687, +chr21 39906841 39953709 uc002yyf.1 0 + 39906841 39906841 0 4 23,108,231,160, 0,2178,33347,46708, +chr21 39906841 39956685 uc002yye.2 0 + 39954356 39955289 0 3 23,160,2329, 0,46708,47515, +chr21 39924087 39953709 uc002yyg.1 0 + 39924087 39924087 0 3 200,231,160, 0,16101,29462, +chr21 39924087 39953709 uc010gol.1 0 + 39924087 39924087 0 2 200,160, 0,29462, +chr21 39936181 39953709 uc002yyh.1 0 + 39936181 39936181 0 3 92,231,160, 0,4007,17368, +chr21 39936181 39953709 uc010gom.1 0 + 39936181 39936181 0 2 92,160, 0,17368, +chr21 39951123 39956685 uc002yyi.1 0 + 39954356 39955289 0 4 273,109,160,2329, 0,458,2426,3233, +chr21 39951123 39956685 uc002yyj.1 0 + 39954356 39955289 0 3 140,160,2329, 0,2426,3233, +chr21 39951123 39956685 uc002yyk.1 0 + 39954356 39955289 0 3 273,160,2329, 0,2426,3233, +chr21 39951123 39956685 uc002yyl.1 0 + 39954356 39955289 0 3 273,109,2329, 0,458,3233, +chr21 39951123 39956685 uc002yym.1 0 + 39954356 39955289 0 2 273,3136, 0,2426, +chr21 39954356 39955289 uc010gon.1 0 + 39954356 39955289 0 1 933, 0, +chr21 40021551 40024477 uc002yyn.1 0 + 40021551 40021551 0 3 238,127,1177, 0,1378,1749, +chr21 40039203 40095893 uc002yyo.1 0 + 40039306 40095154 0 9 120,83,318,300,216,22,92,80,835, 0,809,20128,25509,33683,42760,46601,48127,55855, +chr21 40161216 40223192 uc002yyp.1 0 + 40161297 40222906 0 3 90,52,414, 0,31054,61562, +chr21 40306212 41140909 uc002yyq.1 0 - 40306830 41140457 0 33 971,303,198,150,116,31,177,291,189,99,164,118,154,134,156,147,241,71,168,129,97,197,174,120,279,276,297,276,279,147,147,318,495, 0,29955,31662,39542,43309,50453,62621,66271,67736,71492,73186,74754,81305,111779,121438,130142,132075,154802,166511,174715,175475,176626,263681,283639,299665,325685,326703,335254,341049,356683,680393,696037,834202, +chr21 40306212 41140909 uc002yyr.1 0 - 40306212 40306212 0 33 971,303,198,150,116,31,17,260,189,99,164,118,154,134,156,147,241,71,168,129,97,197,174,120,279,276,297,276,279,147,147,318,495, 0,29955,31662,39542,43309,50453,62621,66302,67736,71492,73186,74754,81305,111779,121438,130142,132075,154802,166511,174715,175475,176626,263681,283639,299665,325685,326703,335254,341049,356683,680393,696037,834202, +chr21 40676879 40679152 uc002yys.2 0 + 40676879 40676879 0 3 373,487,777, 0,569,1496, +chr21 40676879 40679152 uc002yyt.2 0 + 40676879 40676879 0 3 326,79,777, 0,423,1496, +chr21 40676879 40679152 uc002yyu.2 0 + 40676879 40676879 0 2 373,777, 0,1496, +chr21 41435296 41441861 uc002yyv.1 0 - 41435296 41435296 0 2 1916,103, 0,6462, +chr21 41461597 41570394 uc002yyw.1 0 + 41462060 41569421 0 9 775,89,217,129,135,102,150,169,1227, 0,58465,69712,74018,75575,78161,82951,89357,107570, +chr21 41461597 41570394 uc002yyx.1 0 + 41462060 41569421 0 8 775,89,217,129,135,102,169,1227, 0,58465,69712,74018,75575,78161,89357,107570, +chr21 41461597 41570394 uc002yyy.1 0 + 41462060 41569224 0 8 775,89,217,129,135,102,150,1227, 0,58465,69712,74018,75575,78161,82951,107570, +chr21 41469027 41479036 uc002yyz.1 0 - 41472972 41473425 0 1 10009, 0, +chr21 41539758 41570394 uc010goo.1 0 + 41539758 41539758 0 2 102,1227, 0,29409, +chr21 41598067 41651524 uc002yza.1 0 + 41598067 41598067 0 10 40,1521,144,124,59,51,199,88,133,620, 0,15187,18652,34107,40205,41415,41938,42742,44321,52837, +chr21 41610530 41651524 uc002yzb.1 0 + 41610676 41650994 0 8 165,144,124,59,51,88,133,620, 0,6189,21644,27742,28952,30279,31858,40374, +chr21 41610530 41651524 uc002yzc.1 0 + 41610676 41650994 0 7 165,124,59,51,88,133,620, 0,21644,27742,28952,30279,31858,40374, +chr21 41616616 41651524 uc002yzd.1 0 + 41616631 41650994 0 7 247,124,59,51,88,133,620, 0,15558,21656,22866,24193,25772,34288, +chr21 41655819 41661103 uc002yze.1 0 + 41655819 41655819 0 2 33,4038, 0,1246, +chr21 41655819 41702739 uc002yzf.1 0 + 41670703 41702030 0 14 33,320,193,135,155,139,199,79,123,142,159,77,255,952, 0,14813,15766,17994,20387,28542,33564,35590,36874,37173,39947,41244,44721,45968, +chr21 41683339 41702739 uc002yzg.1 0 + 41684460 41702030 0 9 1161,199,79,123,142,159,77,255,952, 0,6044,8070,9354,9653,12427,13724,17201,18448, +chr21 41692693 41702739 uc010gop.1 0 + 41695906 41702030 0 5 123,159,77,255,952, 0,3073,4370,7847,9094, +chr21 41714311 41753008 uc002yzh.1 0 + 41725867 41752555 0 19 303,258,156,99,112,76,126,193,138,155,139,199,79,123,142,159,77,249,684, 0,1323,2241,6691,7240,10018,11535,15322,16500,19179,20372,21201,23273,24933,25485,28622,30652,32106,38013, +chr21 41720023 41753008 uc002yzi.1 0 + 41725867 41752555 0 17 37,99,112,76,126,193,138,155,139,199,79,123,142,159,77,249,684, 0,979,1528,4306,5823,9610,10788,13467,14660,15489,17561,19221,19773,22910,24940,26394,32301, +chr21 41720023 41753008 uc010goq.1 0 + 41725867 41752555 0 15 37,112,126,193,138,155,139,199,79,123,142,159,77,249,684, 0,1528,5823,9610,10788,13467,14660,15489,17561,19221,19773,22910,24940,26394,32301, +chr21 41758350 41801779 uc010gor.1 0 - 41759938 41791930 0 14 1600,153,143,96,176,172,44,111,127,120,87,223,71,33, 0,3180,3842,6094,7252,8771,12023,14618,15922,23840,24953,29802,33565,43396, +chr21 41758350 41801948 uc002yzj.1 0 - 41759938 41791930 0 14 1600,153,143,96,176,172,44,111,127,120,87,223,71,71, 0,3180,3842,6094,7252,8771,12023,14618,15922,23840,24953,29802,33565,43527, +chr21 41761530 41824913 uc010gos.1 0 - 41761530 41791930 0 14 153,143,96,176,172,44,111,127,120,87,223,71,246,132, 0,662,2914,4072,5591,8843,11438,12742,20660,21773,26622,30385,62239,63251, +chr21 42004748 42009004 uc010got.1 0 - 42006111 42007538 0 7 1481,122,81,113,81,164,34, 0,2031,2336,2500,2714,3600,4222, +chr21 42009664 42010809 uc002yzm.1 0 + 42009664 42009664 0 3 109,174,239, 0,565,906, +chr21 42032597 42060318 uc002yzn.1 0 - 42034066 42060270 0 8 2629,259,104,159,50,149,292,230, 0,4513,6390,7244,9785,11728,17156,27491, +chr21 42091453 42172660 uc002yzo.1 0 - 42094468 42172549 0 24 3498,210,81,176,84,132,120,80,164,135,132,95,168,88,95,182,130,231,102,253,154,94,46,213, 0,4487,6309,12125,12724,17676,21553,22066,23038,23874,25289,27931,30137,37161,37837,38192,39658,41347,48814,56290,58900,61316,62051,80994, +chr21 42091453 42172660 uc002yzp.1 0 - 42094468 42172549 0 25 3498,210,81,176,84,132,120,80,164,135,132,95,168,60,88,95,182,130,231,102,253,154,94,46,213, 0,4487,6309,12125,12724,17676,21553,22066,23038,23874,25289,27931,30137,36229,37161,37837,38192,39658,41347,48814,56290,58900,61316,62051,80994, +chr21 42094222 42172660 uc002yzq.1 0 - 42094468 42172549 0 31 729,210,81,176,84,132,120,80,164,135,132,95,168,88,95,182,130,231,102,253,154,198,94,46,189,83,78,128,166,145,213, 0,1718,3540,9356,9955,14907,18784,19297,20269,21105,22520,25162,27368,34392,35068,35423,36889,38578,46045,53521,56131,57986,58547,59282,60518,60880,66255,70449,77650,77951,78225, +chr21 42094222 42172660 uc002yzr.1 0 - 42094468 42172549 0 25 729,210,81,176,84,132,120,80,164,135,132,95,168,60,88,95,182,130,231,102,253,154,94,46,213, 0,1718,3540,9356,9955,14907,18784,19297,20269,21105,22520,25162,27368,33460,34392,35068,35423,36889,38578,46045,53521,56131,58547,59282,78225, +chr21 42178287 42194927 uc002yzs.1 0 - 42182301 42192507 0 3 4235,295,128, 0,13943,16512, +chr21 42178287 42201421 uc002yzt.1 0 - 42182301 42200335 0 6 4235,310,128,114,175,584, 0,13943,16512,20614,21882,22550, +chr21 42178287 42212211 uc002yzu.1 0 - 42182301 42212126 0 11 4235,310,128,114,175,125,65,109,124,123,178, 0,13943,16512,20614,21882,22550,24349,27222,29488,32995,33746, +chr21 42178287 42219868 uc002yzv.1 0 - 42182301 42215176 0 13 4235,310,128,114,175,125,65,109,124,123,105,114,119, 0,13943,16512,20614,21882,22550,24349,27222,29488,32995,33746,36862,41462, +chr21 42178287 42247068 uc002yzw.1 0 - 42182301 42246826 0 14 4235,310,128,114,175,125,65,109,124,123,105,114,99,521, 0,13943,16512,20614,21882,22550,24349,27222,29488,32995,33746,36862,57037,68260, +chr21 42194130 42219868 uc002yzx.1 0 - 42194727 42215176 0 11 797,114,175,125,65,109,124,123,105,114,119, 0,4771,6039,6707,8506,11379,13645,17152,17903,21019,25619, +chr21 42280008 42303565 uc002yzz.2 0 - 42284072 42287273 0 4 5059,1616,65,136, 0,5662,16066,23421, +chr21 42280008 42303565 uc002zab.2 0 - 42284072 42287273 0 3 7278,65,136, 0,16066,23421, +chr21 42280008 42303565 uc002yzy.2 0 - 42284072 42287273 0 2 7278,136, 0,23421, +chr21 42280008 42303565 uc002zaa.2 0 - 42284072 42287273 0 4 7278,154,65,136, 0,15519,16066,23421, +chr21 42284072 42287273 uc010gou.1 0 - 42284072 42287273 0 1 3201, 0, +chr21 42285670 42303565 uc010gov.1 0 - 42285671 42287273 0 4 1616,65,131,136, 0,10404,16974,17759, +chr21 42285670 42303565 uc002zac.2 0 - 42285671 42287273 0 4 1616,214,65,136, 0,9857,10404,17759, +chr21 42356136 42436174 uc002zad.1 0 + 42369322 42430799 0 23 256,243,162,122,187,141,255,113,220,138,242,205,258,113,214,138,320,146,237,160,85,203,900, 0,13046,21126,22333,25336,27340,35968,39208,40910,46604,47922,48548,50615,52915,56153,58129,59873,63387,64048,64714,66755,74481,79138, +chr21 42356136 42436174 uc002zae.1 0 + 42369322 42430799 0 22 256,243,162,122,187,141,255,113,220,138,831,258,113,214,138,320,146,237,160,85,203,900, 0,13046,21126,22333,25336,27340,35968,39208,40910,46604,47922,50615,52915,56153,58129,59873,63387,64048,64714,66755,74481,79138, +chr21 42364494 42436174 uc002zaf.1 0 + 42364494 42430799 0 23 76,243,162,122,187,141,255,113,220,138,242,205,258,113,214,138,320,146,237,160,85,203,900, 0,4688,12768,13975,16978,18982,27610,30850,32552,38246,39564,40190,42257,44557,47795,49771,51515,55029,55690,56356,58397,66123,70780, +chr21 42364494 42436174 uc002zag.1 0 + 42364494 42430799 0 22 76,243,162,122,187,141,255,113,220,138,831,258,113,214,138,320,146,237,160,85,203,900, 0,4688,12768,13975,16978,18982,27610,30850,32552,38246,39564,42257,44557,47795,49771,51515,55029,55690,56356,58397,66123,70780, +chr21 42368072 42370042 uc002zah.1 0 - 42368072 42368072 0 1 1970, 0, +chr21 42378469 42397266 uc010gow.1 0 + 42381493 42397265 0 7 122,97,187,141,255,113,220, 0,1239,3003,5007,13635,16875,18577, +chr21 42378469 42397266 uc002zai.1 0 + 42378469 42378469 0 8 122,180,141,119,154,255,113,220, 0,3003,5007,8113,8580,13635,16875,18577, +chr21 42378469 42397266 uc010gox.1 0 + 42378469 42378469 0 7 122,187,141,255,110,113,220, 0,3003,5007,13635,16417,16875,18577, +chr21 42378469 42397266 uc010goy.1 0 + 42392220 42397265 0 7 122,141,119,154,255,113,220, 0,5007,8113,8580,13635,16875,18577, +chr21 42378469 42397266 uc002zaj.1 0 + 42378469 42378469 0 7 122,187,141,154,255,113,220, 0,3003,5007,8580,13635,16875,18577, +chr21 42378481 42397266 uc010goz.1 0 + 42381493 42397265 0 5 172,187,255,113,220, 0,2991,13623,16863,18565, +chr21 42395312 42401630 uc002zak.1 0 - 42396812 42401561 0 2 1902,156, 0,6162, +chr21 42413697 42436174 uc002zal.1 0 + 42419526 42430799 0 9 433,138,320,146,237,160,85,203,900, 0,568,2312,5826,6487,7153,9194,16920,21577, +chr21 42420850 42430820 uc010gpa.1 0 + 42421303 42430799 0 4 160,142,85,203, 0,332,2041,9767, +chr21 42492867 42590423 uc002zam.1 0 + 42518873 42589571 0 17 161,147,41,244,118,133,51,146,124,115,149,102,169,101,159,119,1081, 0,1888,7257,25982,71381,73614,77206,82585,84871,86191,88200,88522,90361,91403,91809,94853,96475, +chr21 42492867 42590423 uc002zan.1 0 + 42494854 42589571 0 16 161,147,244,118,133,51,146,124,115,149,102,169,101,159,119,1081, 0,1888,25982,71381,73614,77206,82585,84871,86191,88200,88522,90361,91403,91809,94853,96475, +chr21 42509255 42590423 uc002zao.1 0 + 42509334 42589571 0 15 112,244,118,133,51,146,124,115,149,102,169,101,159,119,1081, 0,9594,54993,57226,60818,66197,68483,69803,71812,72134,73973,75015,75421,78465,80087, +chr21 42512335 42590423 uc002zap.1 0 + 42512441 42589571 0 15 148,244,118,133,51,146,124,115,149,102,169,101,159,119,1081, 0,6514,51913,54146,57738,63117,65403,66723,68732,69054,70893,71935,72341,75385,77007, +chr21 42512335 42590423 uc002zaq.1 0 + 42512441 42589571 0 15 148,244,118,133,51,146,124,115,185,102,169,101,159,119,1081, 0,6514,51913,54146,57738,63117,65403,66723,68732,69054,70893,71935,72341,75385,77007, +chr21 42513076 42590423 uc002zar.1 0 + 42513150 42589571 0 15 149,244,118,133,51,146,124,115,149,102,169,101,159,119,1081, 0,5773,51172,53405,56997,62376,64662,65982,67991,68313,70152,71194,71600,74644,76266, +chr21 42579058 42588512 uc010gpb.1 0 + 42581401 42587843 0 6 115,424,169,101,159,792, 0,2009,4170,5212,5618,8662, +chr21 42592172 42593987 uc002zau.2 0 + 42592172 42592172 0 1 1815, 0, +chr21 42605231 42608775 uc002zav.1 0 - 42605434 42608703 0 3 217,147,304, 0,1432,3240, +chr21 42639535 42644176 uc002zaw.1 0 - 42639710 42644135 0 4 189,147,150,120, 0,1128,3523,4521, +chr21 42655459 42659713 uc002zax.1 0 - 42655656 42659673 0 3 214,153,125, 0,973,4129, +chr21 42665067 42676929 uc002zay.1 0 - 42665939 42675468 0 5 890,153,143,96,1687, 0,3826,4651,8227,10175, +chr21 42665067 42682296 uc002zaz.1 0 - 42665939 42681645 0 10 890,153,146,96,170,166,44,126,124,190, 0,3826,4651,8227,10175,11143,12080,13519,16513,17039, +chr21 42665067 42683596 uc002zba.1 0 - 42665939 42681645 0 11 890,153,146,96,170,166,44,126,124,117,492, 0,3826,4651,8227,10175,11143,12080,13519,16513,17039,18037, +chr21 42665067 42689269 uc002zbb.1 0 - 42665939 42688595 0 13 890,153,146,96,170,166,44,126,124,117,111,145,150, 0,3826,4651,8227,10175,11143,12080,13519,16513,17039,18037,23434,24052, +chr21 42665067 42689269 uc002zbc.1 0 - 42665939 42688595 0 13 890,153,143,96,170,166,44,126,124,117,111,145,150, 0,3826,4651,8227,10175,11143,12080,13519,16513,17039,18037,23434,24052, +chr21 42675053 42689269 uc002zbd.1 0 - 42675159 42688595 0 9 359,166,44,126,124,117,111,145,150, 0,1157,2094,3533,6527,7053,8051,13448,14066, +chr21 42697087 42740843 uc002zbe.1 0 + 42697123 42740373 0 15 149,54,187,199,114,170,209,124,100,123,93,145,107,110,608, 0,2398,5512,9114,9500,12532,14491,22787,28193,30923,33579,38543,39403,40625,43148, +chr21 42697087 42740843 uc002zbf.1 0 + 42697123 42740373 0 14 149,54,187,199,170,209,124,100,123,93,145,107,110,608, 0,2398,5512,9114,12532,14491,22787,28193,30923,33579,38543,39403,40625,43148, +chr21 42697087 42740843 uc010gpc.1 0 + 42697087 42697087 0 14 149,54,187,199,170,209,124,100,123,93,145,265,110,608, 0,2398,5512,9114,12532,14491,22787,28193,30923,33579,38543,39245,40625,43148, +chr21 42697087 42740843 uc010gpd.1 0 + 42697087 42697087 0 14 149,54,187,199,170,209,124,100,678,55,145,107,110,608, 0,2398,5512,9114,12532,14491,22787,28193,30923,33633,38543,39403,40625,43148, +chr21 42697087 42740843 uc010gpe.1 0 + 42697123 42740299 0 12 149,54,187,199,170,209,124,100,123,93,145,608, 0,2398,5512,9114,12532,14491,22787,28193,30923,33579,38543,43148, +chr21 42765665 42789470 uc002zbg.1 0 - 42765996 42789365 0 9 384,150,154,72,136,91,106,114,159, 0,3411,4804,10150,13182,13884,20271,20479,23646, +chr21 42789186 42811689 uc002zbh.1 0 + 42789186 42789186 0 3 222,122,234, 0,6288,22269, +chr21 42792810 42874619 uc002zbi.1 0 + 42811633 42873539 0 21 112,122,234,82,133,79,136,77,167,38,81,132,91,63,86,49,74,79,98,65,1096, 0,2664,18645,26144,35066,35840,39880,42772,43804,47471,54430,59326,62446,64183,65076,66195,67353,68728,75186,80104,80713, +chr21 42807092 42874619 uc002zbj.1 0 + 42811633 42873539 0 20 804,234,82,133,79,136,77,167,38,81,132,91,63,86,49,74,79,98,65,1096, 0,4363,11862,20784,21558,25598,28490,29522,33189,40148,45044,48164,49901,50794,51913,53071,54446,60904,65822,66431, +chr21 42892458 42908237 uc002zbk.1 0 - 42892458 42892458 0 2 1569,206, 0,15573, +chr21 42941483 42944423 uc002zbl.2 0 - 42941483 42941483 0 2 2139,681, 0,2259, +chr21 42946930 43068687 uc002zbm.1 0 + 42946993 43068472 0 20 132,71,78,44,180,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,32440,34165,45216,78018,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbn.1 0 + 42947045 43068472 0 17 132,44,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,45216,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbo.1 0 + 42946993 43068472 0 19 132,71,78,76,44,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,32440,34165,43663,45216,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbp.1 0 + 43037007 43068472 0 17 132,180,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,78018,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbq.1 0 + 42946993 43068472 0 17 132,78,44,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,34165,45216,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbs.1 0 + 43037007 43068472 0 17 132,71,44,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,32440,45216,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbr.1 0 + 43037007 43068472 0 16 132,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbt.1 0 + 42946993 43068472 0 16 132,44,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,45216,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbu.1 0 + 42947045 43068472 0 16 132,78,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,34165,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbv.1 0 + 42947045 43068472 0 15 132,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbw.1 0 + 43026603 43068472 0 15 132,44,71,82,75,87,105,83,157,114,105,129,96,82,229, 0,45216,79604,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbx.1 0 + 42946993 43068472 0 19 132,71,78,44,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,32440,34165,45216,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zby.1 0 + 43026603 43068472 0 14 132,71,82,75,87,105,83,157,114,105,129,96,82,229, 0,79604,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zbz.1 0 + 42990595 43068472 0 20 132,71,78,76,44,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,32440,34165,43663,45216,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zca.1 0 + 42947045 43068472 0 19 132,78,44,180,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,34165,45216,78018,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zcb.1 0 + 42946993 43068472 0 19 132,71,44,180,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,32440,45216,78018,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zcc.1 0 + 42947045 43068472 0 18 132,78,44,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,34165,45216,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zcd.1 0 + 42946993 43068472 0 18 132,71,44,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,32440,45216,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zce.1 0 + 42947045 43068472 0 18 132,44,180,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,45216,78018,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zcf.1 0 + 43037007 43068472 0 18 132,78,44,180,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,34165,45216,78018,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 42946930 43068687 uc002zcg.1 0 + 43037007 43068472 0 18 132,44,79,55,71,85,82,75,87,105,83,157,114,105,129,96,82,229, 0,45216,70804,78318,79604,90024,97364,100238,105247,106576,107073,108331,111629,114436,115275,116951,118687,121528, +chr21 43024936 43068687 uc002zch.1 0 + 43026603 43068472 0 15 192,55,71,82,75,87,105,83,157,114,105,129,96,82,229, 0,312,1598,19358,22232,27241,28570,29067,30325,33623,36430,37269,38945,40681,43522, +chr21 43036742 43059157 uc010gpf.1 0 + 43037007 43058799 0 9 106,85,82,75,87,105,83,157,598, 0,212,7552,10426,15435,16764,17261,18519,21817, +chr21 43136272 43172747 uc002zci.1 0 - 43143227 43172674 0 12 188,202,70,184,65,99,61,113,157,141,66,162, 0,6947,9161,10475,11468,12588,16568,19188,20346,30457,33608,36313, +chr21 43136869 43139149 uc002zcj.1 0 - 43136869 43136869 0 1 2280, 0, +chr21 43142404 43172747 uc002zck.1 0 - 43143227 43172674 0 11 1017,70,184,65,99,61,113,157,141,66,162, 0,3029,4343,5336,6456,10436,13056,14214,24325,27476,30181, +chr21 43142404 43172747 uc010gpg.1 0 - 43143227 43172674 0 11 1017,70,184,62,99,61,113,157,141,66,162, 0,3029,4343,5336,6456,10436,13056,14214,24325,27476,30181, +chr21 43142404 43172747 uc002zcl.1 0 - 43143227 43156633 0 11 1017,70,184,65,99,61,113,157,89,66,56, 0,3029,4343,5336,6456,10436,13056,14214,24377,27476,30287, +chr21 43143219 43172747 uc010gph.1 0 - 43143227 43156633 0 11 202,70,184,65,99,61,113,157,89,66,162, 0,2214,3528,4521,5641,9621,12241,13399,23562,26661,29366, +chr21 43186446 43202842 uc002zcm.1 0 + 43186512 43202200 0 4 114,121,1095,800, 0,3659,9914,15596, +chr21 43186446 43202842 uc002zcn.1 0 + 43186512 43202200 0 3 114,121,800, 0,3659,15596, +chr21 43209994 43218800 uc002zco.1 0 - 43211702 43212185 0 2 2476,276, 0,8530, +chr21 43267711 43322136 uc002zcp.1 0 + 43297560 43322136 0 10 132,107,128,172,171,100,98,129,77,256, 0,29793,32958,35520,38535,42375,43600,46770,50338,54169, +chr21 43267711 43326757 uc002zcq.1 0 + 43297560 43323280 0 11 132,107,128,172,171,100,98,129,77,173,3689, 0,29793,32958,35520,38535,42375,43600,46770,50338,54169,55357, +chr21 43297504 43311226 uc002zcr.2 0 + 43297560 43310221 0 5 107,128,172,171,1140, 0,3165,5727,8742,12582, +chr21 43346369 43361583 uc002zcs.1 0 - 43347058 43360957 0 14 793,85,109,135,78,106,85,126,92,70,135,80,135,627, 0,3612,4954,5643,6035,7250,9120,9762,10709,12012,12196,12425,13052,14587, +chr21 43346369 43369020 uc002zct.1 0 - 43347058 43365372 0 17 793,85,109,135,78,106,85,126,92,70,135,80,135,107,217,38,72, 0,3612,4954,5643,6035,7250,9120,9762,10709,12012,12196,12425,13052,15318,18794,20075,22579, +chr21 43346369 43369020 uc002zcu.1 0 - 43347058 43365372 0 17 793,85,109,135,78,106,85,126,92,70,135,80,135,107,217,76,72, 0,3612,4954,5643,6035,7250,9120,9762,10709,12012,12196,12425,13052,15318,18794,20075,22579, +chr21 43346369 43369493 uc002zcv.1 0 - 43347058 43365372 0 17 793,85,109,135,78,106,85,126,92,70,135,80,135,107,217,76,90, 0,3612,4954,5643,6035,7250,9120,9762,10709,12012,12196,12425,13052,15318,18794,20075,23034, +chr21 43346371 43369493 uc002zcw.2 0 - 43347058 43365372 0 18 455,122,85,109,135,78,106,85,126,92,70,135,80,135,107,217,76,90, 0,669,3610,4952,5641,6033,7248,9118,9760,10707,12010,12194,12423,13050,15316,18792,20073,23032, +chr21 43348252 43353725 uc002zcx.1 0 - 43349129 43353621 0 6 1026,85,109,135,78,106, 0,1729,3071,3760,4152,5367, +chr21 43386134 43398431 uc002zcy.1 0 - 43386280 43388902 0 7 294,93,134,99,50,67,938, 0,1515,1699,2482,2738,7497,11359, +chr21 43386134 43400757 uc002zcz.1 0 - 43386280 43388902 0 9 294,93,134,99,50,67,67,88,128, 0,1515,1699,2482,2738,7497,8410,11359,14495, +chr21 43386134 43400757 uc002zda.1 0 - 43386280 43400673 0 8 294,93,134,99,50,67,88,128, 0,1515,1699,2482,2738,8410,11359,14495, +chr21 43386134 43400757 uc002zdb.1 0 - 43386280 43400673 0 8 294,93,134,99,50,67,88,128, 0,1515,1699,2482,2738,7497,11359,14495, +chr21 43386141 43400757 uc010gpi.1 0 - 43387645 43400673 0 7 1601,134,99,50,67,88,128, 0,1692,2475,2731,7490,11352,14488, +chr21 43390818 43400757 uc002zdc.1 0 - 43394458 43400673 0 3 3793,88,128, 0,6675,9811, +chr21 43462209 43465982 uc002zdd.1 0 + 43462278 43465459 0 3 258,123,733, 0,1486,3040, +chr21 43658826 43671430 uc002zdf.1 0 - 43661049 43670486 0 14 2599,232,282,217,126,147,224,124,125,162,64,117,170,113, 0,3024,3741,4502,4834,5340,5715,6491,6724,7119,7455,10888,11504,12491, +chr21 43694331 43698210 uc002zdg.1 0 + 43694331 43694331 0 3 898,1333,782, 0,1149,3097, +chr21 43706401 43722531 uc002zdh.1 0 - 43706401 43706401 0 4 168,183,68,160, 0,9418,13878,15970, +chr21 43773499 43903802 uc002zdi.1 0 - 43774061 43902405 0 9 771,104,118,133,150,104,151,260,108, 0,63034,84639,101131,104081,115098,127396,128870,130195, +chr21 43809497 43809957 uc002zdj.1 0 + 43809497 43809497 0 1 460, 0, +chr21 43903859 43940388 uc002zdk.1 0 + 43903973 43937692 0 16 244,83,58,86,62,130,65,182,95,98,20,132,725,153,64,2890, 0,10333,12757,14319,15085,15483,16721,17182,23728,25002,26219,27253,27965,30737,31888,33639, +chr21 43930440 43940388 uc002zdl.1 0 + 43932084 43937692 0 5 804,725,153,64,2890, 0,1384,4156,5307,7058, +chr21 43963405 44006616 uc002zdm.2 0 + 43963603 44000372 0 11 285,55,105,84,47,86,46,112,137,67,6357, 0,14972,22570,24627,26982,29898,31403,33421,34486,36601,36854, +chr21 43963405 44006616 uc010gpj.1 0 + 43963603 44000280 0 10 285,55,105,84,47,86,46,112,137,6357, 0,14972,22570,24627,26982,29898,31403,33421,34486,36854, +chr21 43963405 44006616 uc002zdn.2 0 + 43963603 44000372 0 10 285,55,105,47,86,46,112,137,67,6357, 0,14972,22570,26982,29898,31403,33421,34486,36601,36854, +chr21 43973208 43983140 uc002zdo.1 0 + 43973208 43973208 0 4 111,304,55,1251, 0,3239,5169,8681, +chr21 43973208 43983169 uc002zdp.2 0 + 43976686 43981384 0 4 111,509,55,1907, 0,3239,5169,8054, +chr21 43985728 44006616 uc002zdq.2 0 + 43986052 44000372 0 10 168,88,84,47,86,46,112,137,67,6357, 0,264,2304,4659,7575,9080,11098,12163,14278,14531, +chr21 44018258 44020687 uc002zdr.1 0 - 44018510 44020578 0 3 381,102,175, 0,708,2254, +chr21 44033845 44048411 uc002zds.2 0 + 44033938 44048083 0 13 226,83,58,86,62,130,65,194,80,98,20,114,591, 0,1813,3135,3782,5652,7885,8094,8370,10033,10980,11325,12737,13975, +chr21 44033845 44048411 uc010gpk.1 0 + 44041758 44048083 0 12 226,83,58,86,130,65,194,80,98,20,114,591, 0,1813,3135,3782,7885,8094,8370,10033,10980,11325,12737,13975, +chr21 44037239 44048411 uc010gpl.1 0 + 44037659 44048083 0 10 474,62,130,65,194,80,98,20,114,591, 0,2258,4491,4700,4976,6639,7586,7931,9343,10581, +chr21 44041669 44048411 uc010gpm.1 0 + 44041707 44048083 0 8 191,65,194,80,98,20,114,591, 0,270,546,2209,3156,3501,4913,6151, +chr21 44050068 44054670 uc002zdt.1 0 - 44050068 44050068 0 4 829,276,651,131, 0,1204,3041,4471, +chr21 44050068 44054670 uc010gpn.1 0 - 44050068 44050068 0 2 829,131, 0,4471, +chr21 44050068 44056876 uc002zdu.1 0 - 44050068 44050068 0 2 829,3767, 0,3041, +chr21 44109543 44231903 uc002zdv.1 0 + 44203990 44226701 0 10 111,63,226,170,162,154,103,76,199,5291, 0,38722,94399,102711,103883,105418,106153,112811,115754,117069, +chr21 44169706 44231903 uc002zdw.1 0 + 44203990 44226701 0 9 54,226,170,162,154,103,76,199,5291, 0,34236,42548,43720,45255,45990,52648,55591,56906, +chr21 44191238 44231903 uc002zdx.1 0 + 44199338 44226701 0 11 129,56,693,226,170,162,154,103,76,199,5291, 0,1344,7620,12704,21016,22188,23723,24458,31116,34059,35374, +chr21 44203942 44231903 uc002zdy.1 0 + 44212262 44226701 0 9 226,148,170,162,154,103,76,199,5291, 0,998,8312,9484,11019,11754,18412,21355,22670, +chr21 44256633 44304536 uc002zdz.2 0 + 44256802 44303814 0 7 236,82,136,197,196,112,763, 0,19766,25467,39955,43373,46778,47140, +chr21 44256633 44350860 uc002zea.1 0 + 44256802 44347840 0 23 236,82,136,197,196,112,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,3259, 0,19766,25467,39955,43373,46778,51213,61999,62714,64227,65368,67239,67690,70463,71797,74477,75374,77508,79598,81738,86032,90453,90968, +chr21 44256633 44350860 uc010gpo.1 0 + 44307923 44347840 0 24 236,82,136,197,196,112,116,248,147,115,77,92,141,113,515,142,159,230,101,127,171,178,195,3259, 0,19766,25467,39955,43373,46778,50728,51213,61999,62714,64227,65368,67239,67690,70463,71797,74477,75374,77508,79598,81738,86032,90453,90968, +chr21 44351635 44375491 uc002zeb.1 0 + 44351725 44375081 0 21 108,113,95,100,144,136,230,144,71,137,149,148,151,181,148,109,66,219,151,75,585, 0,1657,6426,6852,7298,7937,8364,10493,11436,12060,13021,13304,13625,14850,17253,18684,19573,20605,20920,21225,23271, +chr21 44377921 44390033 uc002zec.2 0 + 44378007 44389259 0 7 227,53,114,120,93,157,903, 0,490,2448,3565,6638,9593,11209, +chr21 44377921 44390033 uc002zed.2 0 + 44378007 44389259 0 6 227,53,114,120,157,903, 0,490,2448,3565,9593,11209, +chr21 44471149 44485262 uc002zee.1 0 - 44473344 44485128 0 7 2206,36,165,291,351,41,148, 0,3215,4441,8433,10028,11609,13965, +chr21 44471149 44485262 uc002zef.1 0 - 44473344 44485128 0 6 2206,36,165,291,41,148, 0,3215,4441,8433,11609,13965, +chr21 44473907 44485262 uc010gpp.1 0 - 44473909 44485128 0 6 493,165,291,351,41,148, 0,1683,5675,7270,8851,11207, +chr21 44490650 44506527 uc002zeh.1 0 - 44490707 44505570 0 12 226,86,140,76,89,88,172,113,80,45,113,477, 0,2686,4470,5283,8277,9727,12183,13097,13292,14455,14814,15400, +chr21 44490650 44506527 uc002zeg.1 0 - 44490707 44505570 0 12 223,86,140,76,89,88,172,113,80,45,113,477, 0,2686,4470,5283,8277,9727,12183,13097,13292,14455,14814,15400, +chr21 44530190 44542530 uc002zei.1 0 + 44530317 44542038 0 14 259,175,156,75,114,146,81,116,100,183,122,103,63,564, 0,677,1098,1637,2465,3777,4108,5215,6422,7113,7909,8521,10503,11776, +chr21 44534575 44542530 uc002zej.1 0 + 44535117 44542038 0 8 183,456,100,183,122,103,63,564, 0,490,2037,2728,3524,4136,6118,7391, +chr21 44534575 44542530 uc010gpq.1 0 + 44534575 44534575 0 9 183,456,100,33,68,122,103,63,564, 0,490,2037,2728,2843,3524,4136,6118,7391, +chr21 44534701 44542530 uc010gpr.1 0 + 44534904 44542038 0 7 820,100,183,122,103,63,564, 0,1911,2602,3398,4010,5992,7265, +chr21 44544357 44571684 uc002zek.1 0 + 44549638 44571173 0 25 144,181,161,136,74,78,190,166,45,109,96,93,126,65,64,147,71,88,153,165,62,112,100,106,659, 0,4228,5210,5753,6634,10959,12058,12931,13591,13866,16197,16385,18423,19304,20037,21682,22086,22915,23719,24444,24809,25106,25914,26112,26668, +chr21 44544357 44571684 uc002zel.1 0 + 44544416 44571173 0 22 144,74,78,190,166,45,109,96,93,126,65,64,147,71,88,153,165,62,112,100,106,659, 0,6634,10959,12058,12931,13591,13866,16197,16385,18423,19304,20037,21682,22086,22915,23719,24444,24809,25106,25914,26112,26668, +chr21 44563661 44571684 uc002zem.1 0 + 44566087 44571173 0 11 797,147,71,88,153,165,62,112,100,106,659, 0,2378,2782,3611,4415,5140,5505,5802,6610,6808,7364, +chr21 44563661 44571684 uc002zen.1 0 + 44566087 44571173 0 10 2525,71,88,153,165,62,112,100,106,659, 0,2782,3611,4415,5140,5505,5802,6610,6808,7364, +chr21 44573254 44578835 uc010gps.1 0 - 44574508 44575334 0 4 1383,1552,230,464, 0,1519,4089,5117, +chr21 44573254 44583095 uc002zeo.1 0 - 44574508 44580097 0 8 1383,94,172,221,47,97,19,551, 0,1879,2899,4089,6814,7880,8705,9290, +chr21 44573254 44583713 uc002zep.2 0 - 44574508 44583505 0 7 1383,97,172,230,47,19,285, 0,1879,2899,4089,6814,8705,10174, +chr21 44573254 44583713 uc002zeq.2 0 - 44574508 44583505 0 7 1383,454,172,230,47,19,285, 0,1519,2899,4089,6814,8705,10174, +chr21 44573254 44583713 uc002zer.2 0 - 44574508 44583505 0 7 1383,94,172,230,47,19,285, 0,1879,2899,4089,6814,8705,10174, +chr21 44578846 44583095 uc002zes.1 0 - 44580078 44582743 0 3 1269,19,551, 0,3113,3698, +chr21 44594473 44687392 uc002zet.1 0 + 44598011 44686128 0 33 113,265,89,169,181,167,181,62,201,103,122,354,138,130,146,113,217,119,133,172,184,182,133,88,88,158,77,102,87,106,102,117,1390, 0,3438,4485,13951,16591,19014,25670,27549,28834,32555,40741,41109,45251,47584,49133,50096,51518,54979,55742,56431,63728,67764,68260,73482,74689,75507,76497,76847,84968,86899,88904,90626,91529, +chr21 44597566 44687392 uc002zeu.1 0 + 44598011 44686128 0 32 610,89,169,181,167,181,62,201,103,122,354,138,130,146,113,217,119,133,172,184,182,133,88,88,158,77,102,87,106,102,117,1390, 0,1392,10858,13498,15921,22577,24456,25741,29462,37648,38016,42158,44491,46040,47003,48425,51886,52649,53338,60635,64671,65167,70389,71596,72414,73404,73754,81875,83806,85811,87533,88436, +chr21 44597911 44687392 uc002zew.1 0 + 44598011 44686128 0 32 265,89,169,181,167,181,62,201,103,122,354,138,130,146,113,217,119,133,172,184,182,133,88,88,158,77,102,87,106,102,117,1390, 0,1047,10513,13153,15576,22232,24111,25396,29117,37303,37671,41813,44146,45695,46658,48080,51541,52304,52993,60290,64326,64822,70044,71251,72069,73059,73409,81530,83461,85466,87188,88091, +chr21 44597911 44687392 uc010gpt.1 0 + 44598011 44686128 0 33 265,89,169,181,167,181,62,201,103,122,354,138,130,146,113,217,119,133,172,184,182,133,150,88,88,158,77,102,87,106,102,117,1390, 0,1047,10513,13153,15576,22232,24111,25396,29117,37303,37671,41813,44146,45695,46658,48080,51541,52304,52993,60290,64326,64822,68669,70044,71251,72069,73059,73409,81530,83461,85466,87188,88091, +chr21 44613431 44687392 uc002zex.1 0 + 44613525 44686128 0 28 223,181,62,201,103,122,354,138,130,146,113,217,119,133,172,184,182,133,88,88,158,77,102,87,106,102,117,1390, 0,6712,8591,9876,13597,21783,22151,26293,28626,30175,31138,32560,36021,36784,37473,44770,48806,49302,54524,55731,56549,57539,57889,66010,67941,69946,71668,72571, +chr21 44635582 44687392 uc002zey.1 0 + 44635603 44686128 0 21 354,138,130,146,113,217,119,133,172,184,182,133,88,88,158,77,87,106,102,117,1390, 0,4142,6475,8024,8987,10409,13870,14633,15322,22619,26655,27151,32373,33580,34398,35388,43859,45790,47795,49517,50420, +chr21 44658905 44661051 uc002zez.1 0 - 44658905 44658905 0 2 350,1706, 0,440, +chr21 44699820 44703167 uc002zfa.1 0 + 44700955 44701729 0 2 146,2359, 0,988, +chr21 44700955 44701729 uc010gpu.1 0 + 44700955 44701729 0 1 774, 0, +chr21 44722649 44722699 uc002zfb.1 0 - 44722649 44722649 0 1 50, 0, +chr21 44728608 44728644 uc002zfc.1 0 - 44728608 44728608 0 1 36, 0, +chr21 44737584 44737655 uc002zfd.1 0 - 44737584 44737584 0 1 71, 0, +chr21 44742202 44955923 uc002zfe.1 0 - 44744093 44955857 0 12 2045,102,188,230,187,227,132,157,91,239,221,148, 0,6888,11307,23991,27761,29400,30560,31906,33151,35793,69894,213573, +chr21 44742202 44955923 uc010gpv.1 0 - 44744093 44812195 0 13 2045,102,188,230,187,227,132,157,91,239,221,62,148, 0,6888,11307,23991,27761,29400,30560,31906,33151,35793,69894,192685,213573, +chr21 44761525 44765140 uc002zff.2 0 + 44761525 44761525 0 3 621,74,2202, 0,1044,1413, +chr21 44761525 44765140 uc002zfg.2 0 + 44761525 44761525 0 2 621,2202, 0,1413, +chr21 44783495 44784506 uc002zfh.1 0 - 44783612 44784461 0 1 1011, 0, +chr21 44794745 44795816 uc002zfi.1 0 - 44795001 44795769 0 1 1071, 0, +chr21 44802333 44803071 uc002zfj.1 0 - 44802360 44803026 0 1 738, 0, +chr21 44818033 44819415 uc002zfk.1 0 + 44818063 44819269 0 1 1382, 0, +chr21 44823991 44824909 uc002zfl.1 0 - 44824067 44824883 0 1 918, 0, +chr21 44835576 44836814 uc002zfm.1 0 - 44835695 44836793 0 1 1238, 0, +chr21 44844924 44846519 uc002zfn.2 0 + 44844949 44846077 0 2 159,1421, 0,174, +chr21 44856423 44857299 uc002zfo.1 0 + 44856445 44857225 0 1 876, 0, +chr21 44871467 44872723 uc002zfp.2 0 + 44871516 44872395 0 1 1256, 0, +chr21 44881700 44882800 uc002zfq.1 0 + 44881762 44882518 0 1 1100, 0, +chr21 44890758 44891994 uc002zfr.2 0 + 44890803 44891700 0 1 1236, 0, +chr21 44898557 44899004 uc002zfs.1 0 - 44898620 44898959 0 1 447, 0, +chr21 44902276 44902686 uc002zft.1 0 + 44902324 44902615 0 1 410, 0, +chr21 44910533 44911272 uc002zfu.1 0 - 44910790 44911231 0 1 739, 0, +chr21 44925918 44926506 uc002zfv.1 0 - 44926175 44926466 0 1 588, 0, +chr21 44941514 44942387 uc002zfw.1 0 + 44941544 44942282 0 1 873, 0, +chr21 45013382 45046166 uc002zfx.1 0 - 45015719 45032303 0 7 2450,141,119,46,36,115,118, 0,4507,8259,18880,19020,32244,32666, +chr21 45013382 45046166 uc002zfy.1 0 - 45015719 45046091 0 6 2450,141,119,46,36,118, 0,4507,8259,18880,19020,32666, +chr21 45049959 45062472 uc002zfz.1 0 - 45051293 45062311 0 4 1424,72,129,182, 0,3430,8359,12331, +chr21 45049959 45062472 uc002zga.1 0 - 45051247 45062311 0 4 1424,122,129,182, 0,3380,8359,12331, +chr21 45093940 45118169 uc002zgb.1 0 - 45095923 45117959 0 6 2030,47,172,109,53,325, 0,5612,6595,11565,15797,23904, +chr21 45130296 45155169 uc002zgd.1 0 - 45130710 45155125 0 15 477,167,203,220,245,188,141,90,96,156,242,171,181,89,102, 0,782,2739,3322,4024,5855,7450,9017,13113,14366,15538,17411,20961,24330,24771, +chr21 45130296 45155785 uc002zge.1 0 - 45130710 45155125 0 16 477,167,203,220,245,188,141,90,96,156,242,171,181,89,61,67, 0,782,2739,3322,4024,5855,7450,9017,13113,14366,15538,17411,20961,24330,24771,25422, +chr21 45130296 45165393 uc002zgf.2 0 - 45130710 45155125 0 16 477,167,203,220,245,188,141,90,96,156,242,171,181,89,61,230, 0,782,2739,3322,4024,5855,7450,9017,13113,14366,15538,17411,20961,24330,24771,34867, +chr21 45130296 45165393 uc010gpw.1 0 - 45130710 45155125 0 15 477,167,203,220,245,188,141,90,96,156,242,181,89,61,230, 0,782,2739,3322,4024,5855,7450,9017,13113,14366,15538,20961,24330,24771,34867, +chr21 45130296 45173181 uc002zgg.1 0 - 45130710 45155125 0 16 477,167,203,220,245,188,141,90,96,156,242,171,181,89,61,185, 0,782,2739,3322,4024,5855,7450,9017,13113,14366,15538,17411,20961,24330,24771,42700, +chr21 45165393 45174016 uc002zgh.2 0 + 45165393 45165393 0 4 277,137,43,1820, 0,5817,6574,6803, +chr21 45177156 45179316 uc002zgi.1 0 - 45177156 45177156 0 2 1555,40, 0,2120, +chr21 45179070 45184188 uc002zgj.2 0 - 45179154 45181947 0 4 369,264,144,253, 0,899,2811,4865, +chr21 45179070 45184188 uc002zgk.2 0 - 45179154 45184010 0 3 369,264,253, 0,899,4865, +chr21 45184382 45221316 uc002zgl.1 0 + 45184400 45221146 0 6 147,154,69,148,69,294, 0,3644,20060,26994,33157,36640, +chr21 45184382 45221316 uc002zgm.1 0 + 45184400 45221146 0 6 147,109,69,148,69,294, 0,3644,20060,26994,33157,36640, +chr21 45235614 45238429 uc002zgn.1 0 - 45235614 45235614 0 2 561,183, 0,2632, +chr21 45243556 45249070 uc002zgo.2 0 - 45243556 45243556 0 2 443,284, 0,5230, +chr21 45318942 45390638 uc002zgp.1 0 + 45318942 45318942 0 10 194,106,56,166,172,92,124,118,332,1132, 0,42333,43964,46194,53802,57615,58959,60115,70031,70564, +chr21 45318942 45470902 uc002zgq.1 0 + 45415999 45466540 0 13 194,172,75,935,115,169,149,120,169,182,179,1560,1013, 0,53802,97010,101130,105730,107985,108762,109874,110323,129955,146236,147418,150947, +chr21 45318942 45470902 uc010gpx.1 0 + 45318942 45318942 0 11 194,172,75,115,169,149,169,182,179,1560,1013, 0,53802,97010,105730,107985,108762,110323,129955,146236,147418,150947, +chr21 45318942 45470902 uc002zgr.1 0 + 45415999 45469898 0 13 194,172,75,935,115,169,149,120,169,182,179,90,1013, 0,53802,97010,101130,105730,107985,108762,109874,110323,129955,146236,147418,150947, +chr21 45318942 45470902 uc002zgs.1 0 + 45379138 45466540 0 13 194,172,118,75,935,115,169,149,169,182,179,1560,1013, 0,53802,60115,97010,101130,105730,107985,108762,110323,129955,146236,147418,150947, +chr21 45318942 45470902 uc002zgt.1 0 + 45415999 45466540 0 11 194,172,75,935,115,169,149,169,182,179,4542, 0,53802,97010,101130,105730,107985,108762,110323,129955,146236,147418, +chr21 45318942 45470902 uc002zgv.1 0 + 45318942 45318942 0 12 194,172,75,935,115,169,149,169,182,179,1560,1013, 0,53802,97010,101130,105730,107985,108762,110323,129955,146236,147418,150947, +chr21 45318942 45470902 uc002zgw.1 0 + 45415999 45469898 0 12 194,172,75,935,115,169,149,169,182,179,90,1013, 0,53802,97010,101130,105730,107985,108762,110323,129955,146236,147418,150947, +chr21 45318942 45470902 uc002zgu.1 0 + 45318942 45318942 0 12 194,172,75,935,115,169,149,169,182,179,263,1013, 0,53802,97010,101130,105730,107985,108762,110323,129955,146236,147418,150947, +chr21 45415952 45470902 uc002zgy.1 0 + 45415999 45466540 0 10 75,935,115,169,149,120,169,182,179,4542, 0,4120,8720,10975,11752,12864,13313,32945,49226,50408, +chr21 45478694 45503073 uc002zgz.1 0 + 45478694 45478694 0 3 155,95,280, 0,9180,24099, +chr21 45508270 45521753 uc002zha.1 0 - 45508270 45508270 0 6 1708,206,124,181,126,178, 0,2094,3662,5911,13089,13305, +chr21 45508270 45532239 uc002zhb.1 0 - 45508270 45508270 0 10 1708,206,124,181,126,67,111,145,251,156, 0,2094,3662,5911,13089,14175,18421,19455,21750,23813, +chr21 45508270 45532239 uc002zhc.1 0 - 45509824 45532214 0 9 1708,124,181,126,67,111,145,251,156, 0,3662,5911,13089,14175,18421,19455,21750,23813, +chr21 45508270 45532239 uc002zhd.1 0 - 45511793 45532214 0 8 3786,181,126,67,111,145,251,156, 0,5911,13089,14175,18421,19455,21750,23813, +chr21 45532394 45536081 uc002zhe.1 0 + 45532394 45532394 0 3 193,88,1268, 0,1299,2419, +chr21 45539291 45541696 uc002zhf.1 0 + 45539291 45539291 0 1 2405, 0, +chr21 45649524 45758062 uc002zhg.1 0 + 45649573 45756740 0 42 60,95,545,87,60,130,77,216,27,63,87,54,159,63,27,132,63,27,36,72,36,90,30,27,63,75,27,54,75,69,43,63,44,141,145,74,129,33,246,198,116,1533, 0,197,63059,68712,70293,71168,72228,72567,73144,74719,74887,75284,75517,76780,77612,81678,82264,83235,84303,85092,85653,86042,87352,87504,87980,88318,89362,89679,90175,91317,91867,92416,98828,99233,99951,100175,100655,102378,104173,104881,105928,107005, +chr21 45664058 45669413 uc002zhh.1 0 - 45665698 45666907 0 3 1904,250,187, 0,2696,5168, +chr21 45699851 45758062 uc002zhi.1 0 + 45699872 45756740 0 41 667,545,87,60,130,77,216,27,63,87,54,159,63,27,132,63,27,36,72,36,90,30,27,63,75,27,54,75,69,43,63,44,141,145,74,129,33,246,198,116,1533, 0,12732,18385,19966,20841,21901,22240,22817,24392,24560,24957,25190,26453,27285,31351,31937,32908,33976,34765,35326,35715,37025,37177,37653,37991,39035,39352,39848,40990,41540,42089,48501,48906,49624,49848,50328,52051,53846,54554,55601,56678, +chr21 45742542 45788753 uc010gpy.1 0 - 45742609 45782301 0 6 412,142,202,760,238,275, 0,27616,32569,33188,39570,45936, +chr21 45748757 45758062 uc002zhj.1 0 + 45749755 45756740 0 9 141,145,74,132,33,246,198,116,1533, 0,718,942,1419,3145,4940,5648,6695,7772, +chr21 45751841 45758062 uc002zhk.1 0 + 45754444 45756740 0 5 94,246,198,116,1533, 0,1856,2564,3611,4688, +chr21 45759056 45786779 uc002zhl.1 0 - 45759999 45782301 0 6 1426,142,202,760,238,70, 0,11102,16055,16674,23056,27653, +chr21 45759056 45786779 uc010gpz.1 0 - 45759999 45776316 0 6 1426,142,202,760,242,70, 0,11102,16055,16674,23052,27653, +chr21 45759056 45786779 uc002zhm.1 0 - 45759317 45782301 0 6 438,142,202,760,238,70, 0,11102,16055,16674,23056,27653, +chr21 45837995 45841691 uc002zhn.1 0 + 45837995 45837995 0 2 55,959, 0,2737, +chr21 45877516 45878815 uc010gqa.1 0 + 45877516 45877516 0 1 1299, 0, +chr21 45888110 46180046 uc010gqb.1 0 + 46094427 46179854 0 14 100,38,135,155,24,33,117,132,129,75,42,79,60,452, 0,91623,206192,252439,255830,256822,257228,265586,267133,270182,273819,286148,287017,291484, +chr21 46072302 46080761 uc002zho.1 0 - 46072302 46072302 0 3 3281,51,134, 0,4647,8325, +chr21 46092504 46186795 uc002zhp.1 0 + 46094427 46186048 0 14 239,135,155,24,33,117,132,129,75,42,79,53,170,784, 0,1798,48045,51436,52428,52834,61192,62739,65788,69425,81754,87090,91867,93507, +chr21 46094302 46162867 uc010gqc.1 0 + 46094427 46162054 0 8 135,155,24,33,117,132,403,938, 0,46247,49638,50630,51036,59394,60941,67627, +chr21 46094302 46186795 uc002zhq.1 0 + 46140635 46186048 0 14 135,155,24,33,117,132,129,75,42,79,60,53,170,784, 0,46247,49638,50630,51036,59394,60941,63990,67627,79956,80825,85292,90069,91709, +chr21 46094302 46186795 uc002zhr.1 0 + 46094427 46186048 0 14 135,155,24,33,117,132,129,75,42,76,60,53,170,784, 0,46247,49638,50630,51036,59394,60941,63990,67627,79959,80825,85292,90069,91709, +chr21 46094302 46186795 uc002zhs.1 0 + 46094427 46186048 0 13 135,155,24,33,117,132,129,42,76,60,53,170,784, 0,46247,49638,50630,51036,59394,60941,67627,79959,80825,85292,90069,91709, +chr21 46140549 46186795 uc002zht.1 0 + 46140635 46186048 0 13 155,24,33,117,132,129,144,42,76,60,53,170,784, 0,3391,4383,4789,13147,14694,17743,21380,33712,34578,39045,43822,45462, +chr21 46226090 46249391 uc002zhu.1 0 + 46226192 46248355 0 35 199,130,201,160,129,21,21,45,54,45,27,27,45,54,63,63,54,36,63,63,63,63,51,36,63,66,36,37,9,134,110,184,184,30,1659, 0,885,2520,4777,5195,5406,5750,5861,7335,7859,8003,8509,8629,9024,9230,10261,10415,10614,10999,12418,15672,15951,16372,16649,17148,17404,17908,18582,19010,19504,20212,20469,20778,21371,21642, +chr21 46242041 46249391 uc010gqd.1 0 + 46246353 46248355 0 13 63,51,36,63,66,36,41,134,110,184,184,30,1659, 0,421,698,1197,1453,1957,2631,3553,4261,4518,4827,5420,5691, +chr21 46245538 46249391 uc002zhv.1 0 + 46246353 46248355 0 6 190,110,184,184,30,1659, 0,764,1021,1330,1923,2194, +chr21 46246830 46249391 uc002zhw.1 0 + 46247986 46248355 0 3 222,30,1659, 0,631,902, +chr21 46281393 46283633 uc002zhx.1 0 + 46281393 46281393 0 2 847,835, 0,1405, +chr21 46342460 46374147 uc002zhy.1 0 + 46355818 46373270 0 28 55,142,599,21,66,54,45,27,27,45,54,63,63,90,63,63,63,63,51,36,63,63,36,46,153,453,39,903, 0,13331,13860,14685,15889,17753,17890,18258,18532,18651,19281,19755,20495,20911,21669,22396,22942,23437,23989,24377,24756,26532,26766,27147,27346,27666,28384,30784, +chr21 46342460 46374147 uc002zhz.1 0 + 46355818 46373833 0 28 55,142,599,21,66,54,45,27,27,45,54,63,63,90,63,63,63,63,51,36,63,63,36,46,153,453,39,610, 0,13331,13860,14685,15889,17753,17890,18258,18532,18651,19281,19755,20495,20911,21669,22396,22942,23437,23989,24377,24756,26532,26766,27147,27346,27666,28384,31077, +chr21 46342460 46377191 uc002zia.1 0 + 46355818 46376894 0 28 55,142,599,21,66,54,45,27,27,45,54,63,63,90,63,63,63,63,51,36,63,63,36,46,153,453,39,896, 0,13331,13860,14685,15889,17753,17890,18258,18532,18651,19281,19755,20495,20911,21669,22396,22942,23437,23989,24377,24756,26532,26766,27147,27346,27666,28384,33835, +chr21 46342460 46377191 uc002zib.1 0 + 46369619 46376894 0 9 55,32,63,36,46,153,453,39,896, 0,24787,26532,26766,27147,27346,27666,28384,33835, +chr21 46370831 46377191 uc002zic.1 0 + 46370831 46370831 0 2 52,896, 0,5464, +chr21 46374170 46377189 uc010gqe.1 0 + 46374170 46374170 0 1 3019, 0, +chr21 46380603 46387083 uc002zie.1 0 - 46380603 46380603 0 5 233,159,96,139,633, 0,653,977,2246,5847, +chr21 46380603 46399909 uc002zif.1 0 - 46381328 46399865 0 15 233,89,96,139,44,162,130,62,132,138,180,89,129,184,98, 0,723,977,2246,2618,9155,9556,10004,13857,14126,15296,15630,16645,17887,19208, +chr21 46380603 46399909 uc002zig.1 0 - 46380795 46399865 0 15 233,139,96,139,44,162,130,62,132,138,180,89,129,184,98, 0,653,977,2246,2618,9155,9556,10004,13857,14126,15296,15630,16645,17887,19208, +chr21 46381121 46399909 uc002zih.1 0 - 46381328 46399865 0 14 294,96,139,44,162,130,62,132,138,180,89,129,184,98, 0,459,1728,2100,8637,9038,9486,13339,13608,14778,15112,16127,17369,18690, +chr21 46381121 46399909 uc010gqf.1 0 - 46381587 46399865 0 13 294,96,139,162,130,62,132,138,180,89,129,184,98, 0,459,1728,8637,9038,9486,13339,13608,14778,15112,16127,17369,18690, +chr21 46381326 46399909 uc010gqg.1 0 - 46381328 46396296 0 14 89,96,139,44,162,130,62,132,138,180,114,129,184,98, 0,254,1523,1895,8432,8833,9281,13134,13403,14573,14907,15922,17164,18485, +chr21 46405497 46428729 uc002zii.1 0 - 46405720 46412731 0 4 550,152,351,32, 0,760,7152,23200, +chr21 46432787 46473119 uc002zij.1 0 - 46435445 46473087 0 23 376,170,79,171,81,66,106,97,150,51,72,57,28,98,119,109,136,97,122,109,139,166,46, 0,2620,3435,6045,7230,7756,17390,18226,18982,19805,21108,22242,24579,25292,26734,27239,27943,31030,33408,34184,39106,39988,40286, +chr21 46433466 46473079 uc002zik.1 0 - 46435445 46471972 0 21 2111,79,171,81,66,106,97,150,51,72,57,28,98,119,109,136,97,122,109,139,304, 0,2756,5366,6551,7077,16711,17547,18303,19126,20429,21563,23900,24613,26055,26560,27264,30351,32729,33505,38427,39309, +chr21 46433466 46473119 uc002zil.1 0 - 46435445 46473087 0 22 2111,79,171,81,66,106,97,150,51,72,57,28,98,119,109,136,97,122,109,139,166,46, 0,2756,5366,6551,7077,16711,17547,18303,19126,20429,21563,23900,24613,26055,26560,27264,30351,32729,33505,38427,39309,39607, +chr21 46473585 46496032 uc002zim.2 0 + 46473585 46473585 0 3 23,186,2105, 0,11590,20342, +chr21 46473585 46496032 uc002zin.2 0 + 46474701 46493945 0 4 23,201,186,2105, 0,1083,11590,20342, +chr21 46479475 46491502 uc002zio.1 0 - 46479609 46490780 0 7 293,151,207,130,258,391,854, 0,1695,5677,7668,8331,9673,11173, +chr21 46479475 46503607 uc002zip.1 0 - 46479609 46501285 0 13 293,151,207,130,258,391,98,259,154,135,69,198,327, 0,1695,5677,7668,8331,9673,11173,11494,16395,19258,19642,21655,23805, +chr21 46479475 46511294 uc002ziq.1 0 - 46479609 46509677 0 18 293,151,207,130,258,391,98,259,154,135,69,198,153,114,132,101,203,1028, 0,1695,5677,7668,8331,9673,11173,11494,16395,19258,19642,21655,23805,25659,26146,28983,30187,30791, +chr21 46479475 46529664 uc002zir.1 0 - 46479609 46529628 0 28 293,151,207,130,258,391,98,259,154,135,69,198,153,114,132,101,203,242,161,163,269,198,140,191,145,79,224,1255, 0,1695,5677,7668,8331,9673,11173,11494,16395,19258,19642,21655,23805,25659,26146,28983,30187,30791,31848,35267,37427,38254,40052,42393,44859,45363,48481,48934, +chr21 46480565 46496171 uc002zis.1 0 + 46480565 46480565 0 3 103,186,281, 0,4610,15325, +chr21 46530694 46536539 uc002zit.1 0 + 46531255 46535831 0 3 63,254,864, 0,517,4981, +chr21 46530694 46536539 uc002ziu.1 0 + 46531255 46535831 0 3 385,254,864, 0,517,4981, +chr21 46530694 46542093 uc002ziv.1 0 + 46531255 46541976 0 5 385,254,129,69,213, 0,517,4981,9809,11186, +chr21 46530694 46542093 uc002ziw.1 0 + 46531255 46541976 0 5 63,119,129,69,213, 0,517,4981,9809,11186, +chr21 46530694 46542093 uc002zix.1 0 + 46531255 46541976 0 5 63,254,129,69,213, 0,517,4981,9809,11186, +chr21 46530694 46542093 uc002ziy.1 0 + 46531255 46541976 0 4 385,254,69,213, 0,517,9809,11186, +chr21 46530694 46542093 uc010gqh.1 0 + 46531255 46541976 0 4 63,119,69,213, 0,517,9809,11186, +chr21 46537349 46539139 uc010gqi.1 0 + 46537349 46537349 0 2 570,257, 0,1533, +chr21 46544772 46562562 uc002ziz.2 0 - 46545115 46562413 0 7 364,92,112,165,74,61,209, 0,2054,11025,14285,15043,16777,17581, +chr21 46544772 46565167 uc002zja.2 0 - 46546340 46559348 0 9 364,158,92,112,334,74,141,209,189, 0,1566,2054,11025,14285,15043,16777,17581,20206, +chr21 46545474 46563479 uc002zjc.1 0 - 46546340 46559348 0 7 1022,92,112,334,74,141,1126, 0,1352,10323,13583,14341,16075,16879, +chr21 46545474 46568213 uc002zjf.1 0 - 46546340 46567080 0 8 1022,92,112,165,74,61,209,1233, 0,1352,10323,13583,14341,16075,16879,21506, +chr21 46545477 46568213 uc010gqj.1 0 - 46545477 46545477 0 9 578,158,92,112,334,74,141,209,1233, 0,861,1349,10320,13580,14338,16072,16876,21503, +chr21 46559057 46568213 uc002zjg.1 0 - 46559057 46559057 0 6 334,74,61,209,177,1233, 0,758,2492,3296,4069,7923, +chr21 46568463 46690110 uc002zji.2 0 + 46568570 46689668 0 47 161,213,372,81,256,56,175,137,112,223,82,175,218,455,556,147,152,143,233,163,213,230,117,21,207,171,153,879,156,771,103,155,141,174,196,223,151,687,245,103,174,120,230,77,139,128,486, 0,2255,10275,22006,22621,23335,24890,25562,27307,28982,29865,31331,32853,39359,42463,57573,61711,64621,65078,66549,67043,73143,73892,74113,75468,77429,78209,87067,88715,91947,94082,97848,101709,103500,104273,105888,106385,107407,111781,112856,114041,115960,116732,118374,119687,120571,121161, +chr21 46569229 46690110 uc002zjj.1 0 + 46578825 46689668 0 47 323,213,372,81,256,56,175,137,112,223,82,175,218,455,556,147,152,143,233,163,213,230,117,21,207,171,153,879,156,771,103,155,141,174,196,223,151,450,245,103,174,120,230,77,139,128,486, 0,1489,9509,21240,21855,22569,24124,24796,26541,28216,29099,30565,32087,38593,41697,56807,60945,63855,64312,65783,66277,72377,73126,73347,74702,76663,77443,86301,87949,91181,93316,97082,100943,102734,103507,105122,105619,106641,111015,112090,113275,115194,115966,117608,118921,119805,120395, +chr21 46578738 46594162 uc010gqk.1 0 + 46578738 46578738 0 6 372,81,259,56,175,137, 0,11731,12326,13060,14615,15287, +chr21 46699327 46703021 uc002zjk.1 0 - 46699327 46699327 0 2 932,597, 0,3097, +chr21 46703317 46790647 uc002zjl.1 0 + 46703472 46790347 0 20 246,72,120,120,252,129,120,198,92,111,124,110,103,65,94,120,115,140,137,426, 0,25780,31623,38011,39605,45384,50280,52440,70115,73150,74547,75027,75608,78247,78469,79506,80900,82779,86160,86904, +chr21 46703317 46791548 uc002zjm.1 0 + 46703472 46791387 0 21 246,72,120,120,252,129,120,198,92,111,124,110,103,65,94,120,115,140,137,81,293, 0,25780,31623,38011,39605,45384,50280,52440,70115,73150,74547,75027,75608,78247,78469,79506,80900,82779,86160,86904,87938, +chr21 46703317 46791548 uc010gql.1 0 + 46703472 46791387 0 20 246,72,120,120,252,120,198,92,111,124,110,103,65,94,120,115,140,137,81,293, 0,25780,31623,38011,39605,50280,52440,70115,73150,74547,75027,75608,78247,78469,79506,80900,82779,86160,86904,87938, +chr21 46703317 46794451 uc002zjn.1 0 + 46703472 46794259 0 22 246,72,120,120,252,129,120,198,92,111,124,110,103,65,94,120,115,140,137,81,128,340, 0,25780,31623,38011,39605,45384,50280,52440,70115,73150,74547,75027,75608,78247,78469,79506,80900,82779,86160,86904,87938,90794, +chr21 46703317 46813028 uc002zjo.1 0 + 46703472 46811963 0 38 246,72,120,120,252,129,120,198,92,111,124,110,103,65,94,120,115,140,137,81,128,115,202,110,81,124,122,112,110,131,169,171,62,58,75,175,124,1318, 0,25780,31623,38011,39605,45384,50280,52440,70115,73150,74547,75027,75608,78247,78469,79506,80900,82779,86160,86904,87938,90794,91566,92657,92847,95192,95598,95845,97005,97962,98608,99246,101745,102771,104881,106736,107583,108393, +chr21 46748653 46789614 uc002zjp.1 0 + 46748811 46789614 0 14 177,120,198,92,111,124,110,103,65,94,120,115,140,137, 0,4944,7104,24779,27814,29211,29691,30272,32911,33133,34170,35564,37443,40824, +chr21 46783075 46791548 uc002zjq.1 0 + 46784120 46791387 0 5 1257,140,137,81,293, 0,3021,6402,7146,8180, +chr21 46797251 46803437 uc002zjr.2 0 + 46798578 46802830 0 7 1382,122,112,110,131,169,874, 0,1664,1911,3071,4028,4674,5312, +chr21 46805625 46813028 uc002zjs.1 0 + 46806017 46811963 0 5 521,75,175,124,1318, 0,2573,4428,5275,6085, +chr21 46808123 46813028 uc002zjt.1 0 + 46808123 46808123 0 4 150,175,124,1318, 0,1930,2777,3587, +chr21 46842958 46849463 uc002zju.1 0 - 46843703 46846756 0 3 886,139,110, 0,3660,6395, +chr21 46842958 46849463 uc002zjv.1 0 - 46843791 46846756 0 4 886,94,139,110, 0,1664,3660,6395, +chr21 46879954 46904483 uc002zjw.2 0 + 46881291 46903264 0 7 149,95,105,183,162,165,1399, 0,1281,7920,8691,12843,13960,23130, +chr21 46879954 46909291 uc002zjx.1 0 + 46881291 46908667 0 12 149,109,95,105,183,162,165,176,130,137,172,657, 0,824,1281,7920,8691,12843,13960,23130,25218,26185,27768,28680, +chr21 46879954 46909291 uc002zjy.1 0 + 46881291 46908667 0 11 149,95,105,183,162,165,176,130,137,172,657, 0,1281,7920,8691,12843,13960,23130,25218,26185,27768,28680, +chr21 46879954 46909291 uc010gqm.1 0 + 46881291 46908667 0 9 149,95,105,183,162,165,137,172,657, 0,1281,7920,8691,12843,13960,26185,27768,28680, +chr21 46887625 46906276 uc002zjz.1 0 + 46892812 46905317 0 6 354,183,162,165,176,1104, 0,1020,5172,6289,15459,17547, diff --git a/log b/log deleted file mode 100644 index 869778141609467030385afb7bd3ed625f6957f9..0000000000000000000000000000000000000000 --- a/log +++ /dev/null @@ -1,437 +0,0 @@ - -Program: bamToBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Converts BAM alignments to BED6 or BEDPE format. - -Usage: bamToBed [OPTIONS] -i <bam> - -Options: - -bedpe Write BEDPE format. - - -ed Use BAM edit distance (NM tag) for score. - Default is to use mapping quality. - Not available for BEDPE format. - - -Program: closestBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: For each feature in BED A, finds the closest - feature (upstream or downstream) in BED B. - -Usage: closestBed [OPTIONS] -a <a.bed> -b <b.bed> - -Options: - -s Force strandedness. That is, find the closest feature in B - that overlaps A on the same strand. - - By default, overlaps are reported without respect to strand. - - -t How ties for closest feature are handled. This occurs when two - features in B have exactly the same overlap with A. - By default, all such features in B are reported. - Here are all the options: - - "all" Report all ties (default). - - "first" Report the first tie that occurred in the B file. - - "last" Report the last tie that occurred in the B file. - -Notes: - Reports "none" for chrom and "-1" for all other fields when a feature - is not found in B on the same chromosome as the feature in A. - E.g. none -1 -1 - - -Program: complementBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Returns the base pair complement of a BED file. - -Usage: complementBed [OPTIONS] -i <bed> -g <genome> - -Notes: - (1) The genome file should tab delimited and structured as follows: - <chromName><TAB><chromSize> - - For example, Human (hg19): - chr1 249250621 - chr2 243199373 - ... - chr18_gl000207_random 4262 - -Tips: - One can use the UCSC Genome Browser's MySQL database to extract - chromosome sizes. For example, H. sapiens: - - mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -e / - "select chrom, size from hg19.chromInfo" > hg19.genome - - -Program: coverageBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Returns the depth and breadth of coverage of features from A - on the intervals in B. - -Usage: coverageBed [OPTIONS] -a <a.bed> -b <b.bed> - -Options: - -s Force strandedness. That is, only include hits in A that - overlap B on the same strand. - - By default, hits are included without respect to strand. - -Output: - After each entry in B, reports: - 1) The number of features in A that overlapped the B interval. - 2) The number of bases in B that had non-zero coverage. - 3) The length of the entry in B. - 4) The fraction of bases in B that had non-zero coverage. - -Program: fastaFromBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Extract DNA sequences into a fasta file based on BED coordinates. - -Usage: fastaFromBed [OPTIONS] -fi -bed -fo - -Options: - -fi Input FASTA file - -bed BED file of ranges to extract from -fi - -fo Output FASTA file - -name Use the BED name field (#4) for the FASTA header - -Program: genomeCoverageBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Compute the coverage of a BED file among a genome. - -Usage: genomeCoverageBed [OPTIONS] -i <bed> -g <genome> - -Options: - -d Report the depth at each genome position. - Default behavior is to report a histogram. - - -max Combine all positions with a depth >= max into - a single bin in the histogram. - - (INTEGER) - -Notes: - (1) The genome file should tab delimited and structured as follows: - <chromName><TAB><chromSize> - - For example, Human (hg19): - chr1 249250621 - chr2 243199373 - ... - chr18_gl000207_random 4262 - - (2) NOTE: The input BED file must be grouped by chromosome. - A simple "sort -k 1,1 <BED> > <BED>.sorted" will suffice. - -Tips: - One can use the UCSC Genome Browser's MySQL database to extract - chromosome sizes. For example, H. sapiens: - - mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -e / - "select chrom, size from hg19.chromInfo" > hg19.genome - - -Program: intersectBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Report overlaps between a.bed and b.bed. - -Usage: intersectBed [OPTIONS] -a <a.bed> -b <b.bed> - -Options: - -abam The A input file is in BAM format. Output will be BAM as well. - - -outbam Write output as BAM. This will report those BAM alignments. - that meet the intersect criteria. BAM entry is written once. - - -wa Write the original entry in A for each overlap. - - -wb Write the original entry in B for each overlap. - - Useful for knowing _what_ A overlaps. Restricted by -f. - - -u Write the original A entry _once_ if _any_ overlaps found in B. - - In other words, just report the fact >=1 hit was found. - - -c For each entry in A, report the number of overlaps with B. - - Reports 0 for A entries that have no overlap with B. - - Overlaps restricted by -f. - - -v Only report those entries in A that have _no overlaps_ with B. - - Similar to "grep -v." - - -f Minimum overlap required as a fraction of A. - - Default is 1E-9 (i.e., 1bp). - - FLOAT (e.g. 0.50) - - -r Require that the fraction overlap be reciprocal for A and B. - - In other words, if -f is 0.90 and -r is used, this requires - that B overlap 90% of A and A _also_ overlaps 90% of B. - - -s Force strandedness. That is, only report hits in B that - overlap A on the same strand. - - By default, overlaps are reported without respect to strand. - - -Program: linksBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Creates HTML links to an UCSC Genome Browser from a BED file. - -Usage: linksBed [OPTIONS] -i <input.bed> > out.html - -Options: - -base The browser basename. Default: http://genome.ucsc.edu - -org The organism. Default: human - -db The build. Default: hg18 - -Example: - By default, the links created will point to the human (hg18) UCSC browser. - If you have a local mirror, you can override this behavior by supplying - the -base, -org, and -db options. - - For example, if the main URL of your local mirror for mouse MM9 is called: - http://mymirror.myuniversity.edu, then you would use the following: - -base http://mymirror.myuniversity.edu - -org mouse - -db mm9 - -Program: maskFastaFromBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Mask a fasta file based on BED coordinates. - -Usage: maskFastaFromBed [OPTIONS] -fi -out -bed - -Options: - -fi Input FASTA file - -bed BED file of ranges to mask in -fi - -fo Output FASTA file - -soft Enforce "soft" masking. That is, instead of masking with Ns, - mask with lower-case bases. - -Program: mergeBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Merges overlapping BED entries into a single interval. - -Usage: mergeBed [OPTIONS] -i <input.bed> - -Options: - -s Force strandedness. That is, only merge features - that are the same strand. - - By default, merging is done without respect to strand. - - -n Report the number of BED entries that were merged. - - Note: "1" is reported if no merging occurred. - - -d Maximum distance between features allowed for features - to be merged. - - Def. 0. That is, overlapping & book-ended features are merged. - - (INTEGER) - - -nms Report the names of the merged features separated by semicolons. - - -Program: pairToBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Report overlaps between a BEDPE file and a BED file. - -Usage: pairToBed [OPTIONS] -a <BEDPE> -b <BED> - -Options: - -abam The A input file is in BAM format. Output will be BAM as well. - - -outbam Write output as BAM. This will report those BAM alignments. - that meet the intersect criteria. BAM entry is written once. - - -f Minimum overlap required as fraction of A (e.g. 0.05). - Default is 1E-9 (effectively 1bp). - - -s Enforce strandedness when finding overlaps. - Default is to ignore stand. - Not applicable with -type inspan or -type outspan. - - -type Approach to reporting overlaps between BEDPE and BED. - - either Report overlaps if either end of A overlaps B. - - Default. - neither Report A if neither end of A overlaps B. - both Report overlaps if both ends of A overlap B. - xor Report overlaps if one and only one end of A overlaps B. - ispan Report overlaps between [end1, start2] of A and B. - - Note: If chrom1 <> chrom2, entry is ignored. - ospan Report overlaps between [start1, end2] of A and B. - - Note: If chrom1 <> chrom2, entry is ignored. - - notispan Report A if ispan of A doesn't overlap B. - - Note: If chrom1 <> chrom2, entry is ignored. - notospan Report A if ospan of A doesn't overlap B. - - Note: If chrom1 <> chrom2, entry is ignored. - -Refer to the BEDTools manual for BEDPE format. - - -Program: pairToPair (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Report overlaps between two paired-end BED files (BEDPE). - -Usage: pairToPair [OPTIONS] -a <BEDPE> -b <BEDPE> - -Options: - -f Minimum overlap required as fraction of A (e.g. 0.05). - Default is 1E-9 (effectively 1bp). - - -type Approach to reporting overlaps between A and B. - neither Report overlaps if neither end of A overlaps B. - - both Report overlaps if both ends of A overlap B. - - Default. - -is Ignore strands when searching for overlaps. - - By default, strands are enforced. - -Refer to the BEDTools manual for BEDPE format. - - -Program: shuffleBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Randomly permute the locations of a BED file among a genome. - -Usage: shuffleBed [OPTIONS] -g <genome> -i <bed> - -Options: - -excl A BED file of coordinates in which features in -i - should not be placed (e.g. gaps.bed). - - -chrom Keep features in -i on the same chromosome. - - By default, the chrom and position are randomly chosen. - - -seed Supply an integer seed for the shuffling. - - By default, the seed is chosen automatically. - - (INTEGER) - -Notes: - (1) The genome file should tab delimited and structured as follows: - <chromName><TAB><chromSize> - - For example, Human (hg19): - chr1 249250621 - chr2 243199373 - ... - chr18_gl000207_random 4262 - -Tips: - One can use the UCSC Genome Browser's MySQL database to extract - chromosome sizes. For example, H. sapiens: - - mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -e / - "select chrom, size from hg19.chromInfo" > hg19.genome - - -Program: slopBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Add requested base pairs of "slop" to each BED entry. - -Usage: slopBed [OPTIONS] -i <bed> -g <genome> [-b <int> or (-l and -r)] - -Options: - -b Increase the BED entry by the same number base pairs in each direction. - - (Integer) - -l The number of base pairs to subtract from the start coordinate. - - (Integer) - -r The number of base pairs to add to the end coordinate. - - (Integer) - -s Define -l and -r based on strand. - E.g. if used, -l 500 for a negative-stranded feature, - it will add 500 bp downstream. Default = false. - -Notes: - (1) Starts will be set to 0 if the requested slop would force it below 0. - (2) Ends will be set to the chromosome length if the requested slop would - force it above the max chrom length. - (3) The genome file should tab delimited and structured as follows: - <chromName><TAB><chromSize> - - For example, Human (hg19): - chr1 249250621 - chr2 243199373 - ... - chr18_gl000207_random 4262 - -Tips: - One can use the UCSC Genome Browser's MySQL database to extract - chromosome sizes. For example, H. sapiens: - - mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -e / - "select chrom, size from hg19.chromInfo" > hg19.genome - - -Program: sortBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Sorts a BED file in various and useful ways. - -Usage: sortBed [OPTIONS] -i <input.bed> - -Options: - -sizeA Sort by feature size in ascending order. - -sizeD Sort by feature size in descending order. - -chrThenSizeA Sort by chrom (asc), then feature size (asc). - -chrThenSizeD Sort by chrom (asc), then feature size (desc). - -chrThenScoreA Sort by chrom (asc), then score (asc). - -chrThenScoreD Sort by chrom (asc), then score (desc). - - -Program: subtractBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Removes the portion(s) of an interval that is overlapped - by another feature(s). - -Usage: subtractBed [OPTIONS] -a <a.bed> -b <b.bed> - -Options: - -f Minimum overlap required as a fraction of A. - - Default is 1E-9 (i.e., 1bp). - - (FLOAT) (e.g. 0.50) - - -s Force strandedness. That is, only report hits in B that - overlap A on the same strand. - - By default, overlaps are reported without respect to strand. - - -Program: windowBed (v2.3.3) -Author: Aaron Quinlan (aaronquinlan@gmail.com) -Summary: Examines a "window" around each feature in A and - reports all features in B that overlap the window. For each - overlap the entire entry in A and B are reported. - -Usage: windowBed [OPTIONS] -a <a.bed> -b <b.bed> - -Options: - -w Base pairs added upstream and downstream of each entry - in A when searching for overlaps in B. - - Creates symterical "windows" around A. - - Default is 1000 bp. - - (INTEGER) - - -l Base pairs added upstream (left of) of each entry - in A when searching for overlaps in B. - - Allows one to define assymterical "windows". - - Default is 1000 bp. - - (INTEGER) - - -r Base pairs added downstream (right of) of each entry - in A when searching for overlaps in B. - - Allows one to define assymterical "windows". - - Default is 1000 bp. - - (INTEGER) - - -sw Define -l and -r based on strand. For example if used, -l 500 - for a negative-stranded feature will add 500 bp downstream. - - Default = disabled. - - -sm Only report hits in B that overlap A on the same strand. - - By default, overlaps are reported without respect to strand. - - -u Write the original A entry _once_ if _any_ overlaps found in B. - - In other words, just report the fact >=1 hit was found. - - -c For each entry in A, report the number of overlaps with B. - - Reports 0 for A entries that have no overlap with B. - - Overlaps restricted by -f. - - -v Only report those entries in A that have _no overlaps_ with B. - - Similar to "grep -v." -