diff --git a/test/merge/test-merge.sh b/test/merge/test-merge.sh index 04087f69f648bbf33543bde82abaafad084a235e..91cf87dfbf71f928771c0e8862d53ab9e5987edb 100644 --- a/test/merge/test-merge.sh +++ b/test/merge/test-merge.sh @@ -36,6 +36,7 @@ rm obs exp # Enforce coordinate sorted input. ########################################################### echo " merge.t2...\c" +command -v tac 2>/dev/null || alias tac="sed '1!G;h;\$!d'" tac a.bed | $BT merge -i - 2> obs echo "ERROR: input file: (-) is not sorted by chrom then start. The start coordinate at line 3 is less than the start at line 2" > exp @@ -67,7 +68,7 @@ echo \ ***** *****ERROR: No names found to report for the -names option. Exiting. *****" > exp -$BT merge -i a.bed -nms &> obs +$BT merge -i a.bed -nms > obs 2>&1 check obs exp rm obs exp