From 65ceb1f58e7c92633204c5b4817544df9d33c33d Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Fri, 30 Mar 2012 11:17:42 -0400
Subject: [PATCH] support for bedtools existing somewhere other than PATH
---
scripts/makeBashScripts.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/scripts/makeBashScripts.py b/scripts/makeBashScripts.py
index 51b99d36..6b1a80dd 100644
--- a/scripts/makeBashScripts.py
+++ b/scripts/makeBashScripts.py
@@ -53,7 +53,7 @@ def main():
script = open('bin/' + old, 'w')
script.write("#!/bin/sh\n")
- script.write("bedtools " + new + " \"$@\"\n")
+ script.write("${0%/*}/bedtools " + new + " \"$@\"\n")
script.close()
if __name__ == "__main__":
--
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