From 86d7767ec73de5651d422168de24c2702e26b672 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Tue, 21 Sep 2010 10:00:04 -0400
Subject: [PATCH] overlap assumes stdin.
---
src/overlap/overlap.cpp | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/src/overlap/overlap.cpp b/src/overlap/overlap.cpp
index 25f6aef0..ebb5da76 100644
--- a/src/overlap/overlap.cpp
+++ b/src/overlap/overlap.cpp
@@ -35,16 +35,14 @@ void ComputeOverlaps(istream &input, short &s1Col, short &e1Col, short &s2Col, s
int main(int argc, char* argv[]) {
// input files
- string inFile;
+ string inFile = "stdin";
string columns;
// our configuration variables
bool showHelp = false;
- bool haveInFile = false;
+ bool haveInFile = true;
bool haveColumns = false;
- // check to see if we should print out some help
- if(argc <= 1) showHelp = true;
for(int i = 1; i < argc; i++) {
int parameterLength = (int)strlen(argv[i]);
@@ -64,7 +62,6 @@ int main(int argc, char* argv[]) {
if(PARAMETER_CHECK("-i", 2, parameterLength)) {
if ((i+1) < argc) {
- haveInFile = true;
inFile = argv[i + 1];
i++;
}
--
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