From a0250c315276a46d1ee4827e88ff4c77680444d4 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Wed, 27 Jan 2010 20:22:20 -0500
Subject: [PATCH] Fixed command line bug in bamToBed.
---
src/bamToBed/bamToBed.cpp | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/bamToBed/bamToBed.cpp b/src/bamToBed/bamToBed.cpp
index 0a6951d8..3a5d9766 100755
--- a/src/bamToBed/bamToBed.cpp
+++ b/src/bamToBed/bamToBed.cpp
@@ -71,8 +71,8 @@ int main(int argc, char* argv[]) {
if ((i+1) < argc) {
haveBam = true;
bamFile = argv[i + 1];
+ i++;
}
- i++;
}
else if(PARAMETER_CHECK("-bedpe", 6, parameterLength)) {
writeBedPE = true;
--
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