diff --git a/src/utils/NewChromsweep/NewChromsweep.cpp b/src/utils/NewChromsweep/NewChromsweep.cpp index af5ffc4b77e734992a8e5a434405b7be9221b2ab..0b12106f1bfce1f0f5968d4cfeedd468061b9af4 100644 --- a/src/utils/NewChromsweep/NewChromsweep.cpp +++ b/src/utils/NewChromsweep/NewChromsweep.cpp @@ -396,7 +396,7 @@ void NewChromSweep::testThatAllDbChromsExistInQuery() if (qTrack->find(chrom) == qTrack->end()) { fprintf(stderr, "ERROR: Database file %s contains chromosome %s, but the query file does not.\n", _context->getInputFileName(i).c_str(), chrom.c_str()); - fprintf(stderr, "\t Please re-reun with the -g option for a genome file.\n\t See documentation for details.\n"); + fprintf(stderr, " Please re-reun with the -g option for a genome file.\n See documentation for details.\n"); exit(1); } } diff --git a/test/intersect/sortAndNaming/test-sort-and-naming.sh b/test/intersect/sortAndNaming/test-sort-and-naming.sh index 4d71010e1ee061fac6b9655cd31c475cdd680bc0..28c1596214270c4845fc4490c305ec905f7ffa0b 100644 --- a/test/intersect/sortAndNaming/test-sort-and-naming.sh +++ b/test/intersect/sortAndNaming/test-sort-and-naming.sh @@ -60,8 +60,8 @@ rm obs echo " intersect.t04...\c" echo \ "ERROR: Database file db1_num.bed contains chromosome chr3, but the query file does not. - Please re-reun with the -g option for a genome file. - See documentation for details." >exp + Please re-reun with the -g option for a genome file. + See documentation for details." >exp $BT intersect -a q1_num.bed -b db1_num.bed db2_num.bed -sorted 2>&1 > /dev/null | cat - > obs check obs exp rm obs