From b9bd9a86c9af3b6bc36b756b462b60bcbf512308 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Tue, 19 May 2009 09:15:46 -0400
Subject: [PATCH] Allowed empty lines in bedFile.cpp
---
src/utils/bedFile/bedFile.cpp | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/utils/bedFile/bedFile.cpp b/src/utils/bedFile/bedFile.cpp
index 9bed68e0..663cacd0 100755
--- a/src/utils/bedFile/bedFile.cpp
+++ b/src/utils/bedFile/bedFile.cpp
@@ -299,12 +299,12 @@ bool BedFile::parseBedLine (BED &bed, const vector<string> &lineVector, const in
cerr << "Only one BED field detected: " << lineNum << ". Verify that your files are TAB-delimited. Exiting..." << endl;
exit(1);
}
- else if (lineVector.size() != this->bedType) {
+ else if ((lineVector.size() != this->bedType) && (lineVector.size() != 0)) {
cerr << "Differing number of BED fields encountered at line: " << lineNum << ". Exiting..." << endl;
exit(1);
}
- else if (lineVector.size() < 3) {
- cerr << "TAB delimited BED file with at least 3 fields (chrom, start, end) is required. Exiting..." << endl;
+ else if ((lineVector.size() < 3) && (lineVector.size() != 0)) {
+ cerr << "TAB delimited BED file with at least 3 fields (chrom, start, end) is required at line: "<< lineNum << ". Exiting..." << endl;
exit(1);
}
return false;
--
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