diff --git a/src/windowBed/windowMain.cpp b/src/windowBed/windowMain.cpp index 982109e403781383072f2597de3e56e8b5114c1d..7d70f3a4359951b233cf83b31e8f1812390f8a1f 100644 --- a/src/windowBed/windowMain.cpp +++ b/src/windowBed/windowMain.cpp @@ -111,7 +111,7 @@ int main(int argc, char* argv[]) { else if (PARAMETER_CHECK("-sm", 3, parameterLength)) { matchOnSameStrand = true; } - else if (PARAMETER_CHECK("-sm", 3, parameterLength)) { + else if (PARAMETER_CHECK("-Sm", 3, parameterLength)) { matchOnDiffStrand = true; } else if (PARAMETER_CHECK("-w", 2, parameterLength)) {