From d1b0d0d46ff0b4d5d2d6690851400b949debafe2 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Mon, 1 Sep 2014 21:45:18 +0200
Subject: [PATCH] Add human hg38 genome file
Created with the UCSC fetchChromSizes [1] tool:
fetchChromSizes hg38 > genomes/human.hg38.genome
[1] http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes
---
genomes/human.hg38.genome | 455 ++++++++++++++++++++++++++++++++++++++
1 file changed, 455 insertions(+)
create mode 100644 genomes/human.hg38.genome
diff --git a/genomes/human.hg38.genome b/genomes/human.hg38.genome
new file mode 100644
index 00000000..39a3ef9a
--- /dev/null
+++ b/genomes/human.hg38.genome
@@ -0,0 +1,455 @@
+chr1 248956422
+chr2 242193529
+chr3 198295559
+chr4 190214555
+chr5 181538259
+chr6 170805979
+chr7 159345973
+chrX 156040895
+chr8 145138636
+chr9 138394717
+chr11 135086622
+chr10 133797422
+chr12 133275309
+chr13 114364328
+chr14 107043718
+chr15 101991189
+chr16 90338345
+chr17 83257441
+chr18 80373285
+chr20 64444167
+chr19 58617616
+chrY 57227415
+chr22 50818468
+chr21 46709983
+chr15_KI270905v1_alt 5161414
+chr6_GL000256v2_alt 4929269
+chr6_GL000254v2_alt 4827813
+chr6_GL000251v2_alt 4795265
+chr6_GL000253v2_alt 4677643
+chr6_GL000250v2_alt 4672374
+chr6_GL000255v2_alt 4606388
+chr6_GL000252v2_alt 4604811
+chr17_KI270857v1_alt 2877074
+chr16_KI270853v1_alt 2659700
+chr16_KI270728v1_random 1872759
+chr17_GL000258v2_alt 1821992
+chr5_GL339449v2_alt 1612928
+chr14_KI270847v1_alt 1511111
+chr17_KI270908v1_alt 1423190
+chr14_KI270846v1_alt 1351393
+chr5_KI270897v1_alt 1144418
+chr7_KI270803v1_alt 1111570
+chr19_GL949749v2_alt 1091841
+chr19_KI270938v1_alt 1066800
+chr19_GL949750v2_alt 1066390
+chr19_GL949748v2_alt 1064304
+chr19_GL949751v2_alt 1002683
+chr19_GL949746v1_alt 987716
+chr19_GL949752v1_alt 987100
+chr8_KI270821v1_alt 985506
+chr1_KI270763v1_alt 911658
+chr6_KI270801v1_alt 870480
+chr19_GL949753v2_alt 796479
+chr19_GL949747v2_alt 729520
+chr8_KI270822v1_alt 624492
+chr4_GL000257v2_alt 586476
+chr12_KI270904v1_alt 572349
+chr4_KI270925v1_alt 555799
+chr15_KI270852v1_alt 478999
+chr15_KI270727v1_random 448248
+chr9_KI270823v1_alt 439082
+chr15_KI270850v1_alt 430880
+chr1_KI270759v1_alt 425601
+chr12_GL877876v1_alt 408271
+chrUn_KI270442v1 392061
+chr17_KI270862v1_alt 391357
+chr15_GL383555v2_alt 388773
+chr19_GL383573v1_alt 385657
+chr4_KI270896v1_alt 378547
+chr4_GL383528v1_alt 376187
+chr17_GL383563v3_alt 375691
+chr8_KI270810v1_alt 374415
+chr1_GL383520v2_alt 366580
+chr1_KI270762v1_alt 354444
+chr15_KI270848v1_alt 327382
+chr17_KI270909v1_alt 325800
+chr14_KI270844v1_alt 322166
+chr8_KI270900v1_alt 318687
+chr10_GL383546v1_alt 309802
+chr13_KI270838v1_alt 306913
+chr8_KI270816v1_alt 305841
+chr22_KI270879v1_alt 304135
+chr8_KI270813v1_alt 300230
+chr11_KI270831v1_alt 296895
+chr15_GL383554v1_alt 296527
+chr8_KI270811v1_alt 292436
+chr18_GL383567v1_alt 289831
+chrX_KI270880v1_alt 284869
+chr8_KI270812v1_alt 282736
+chr19_KI270921v1_alt 282224
+chr17_KI270729v1_random 280839
+chr17_JH159146v1_alt 278131
+chrX_KI270913v1_alt 274009
+chr6_KI270798v1_alt 271782
+chr7_KI270808v1_alt 271455
+chr22_KI270876v1_alt 263666
+chr15_KI270851v1_alt 263054
+chr22_KI270875v1_alt 259914
+chr1_KI270766v1_alt 256271
+chr19_KI270882v1_alt 248807
+chr3_KI270778v1_alt 248252
+chr15_KI270849v1_alt 244917
+chr4_KI270786v1_alt 244096
+chr12_KI270835v1_alt 238139
+chr17_KI270858v1_alt 235827
+chr19_KI270867v1_alt 233762
+chr16_KI270855v1_alt 232857
+chr8_KI270926v1_alt 229282
+chr5_GL949742v1_alt 226852
+chr3_KI270780v1_alt 224108
+chr17_GL383565v1_alt 223995
+chr2_KI270774v1_alt 223625
+chr4_KI270790v1_alt 220246
+chr11_KI270927v1_alt 218612
+chr19_KI270932v1_alt 215732
+chr11_KI270903v1_alt 214625
+chr2_KI270894v1_alt 214158
+chr14_GL000225v1_random 211173
+chrUn_KI270743v1 210658
+chr11_KI270832v1_alt 210133
+chr7_KI270805v1_alt 209988
+chr4_GL000008v2_random 209709
+chr7_KI270809v1_alt 209586
+chr19_KI270887v1_alt 209512
+chr4_KI270789v1_alt 205944
+chr3_KI270779v1_alt 205312
+chr19_KI270914v1_alt 205194
+chr19_KI270886v1_alt 204239
+chr11_KI270829v1_alt 204059
+chr14_GL000009v2_random 201709
+chr21_GL383579v2_alt 201197
+chr11_JH159136v1_alt 200998
+chr19_KI270930v1_alt 200773
+chrUn_KI270747v1 198735
+chr18_GL383571v1_alt 198278
+chr19_KI270920v1_alt 198005
+chr6_KI270797v1_alt 197536
+chr3_KI270935v1_alt 197351
+chr17_KI270861v1_alt 196688
+chr15_KI270906v1_alt 196384
+chr5_KI270791v1_alt 195710
+chr14_KI270722v1_random 194050
+chr16_GL383556v1_alt 192462
+chr13_KI270840v1_alt 191684
+chr14_GL000194v1_random 191469
+chr11_JH159137v1_alt 191409
+chr19_KI270917v1_alt 190932
+chr7_KI270899v1_alt 190869
+chr19_KI270923v1_alt 189352
+chr10_KI270825v1_alt 188315
+chr19_GL383576v1_alt 188024
+chr19_KI270922v1_alt 187935
+chrUn_KI270742v1 186739
+chr22_KI270878v1_alt 186262
+chr19_KI270929v1_alt 186203
+chr11_KI270826v1_alt 186169
+chr6_KB021644v2_alt 185823
+chr17_GL000205v2_random 185591
+chr1_KI270765v1_alt 185285
+chr19_KI270916v1_alt 184516
+chr19_KI270890v1_alt 184499
+chr3_KI270784v1_alt 184404
+chr12_GL383551v1_alt 184319
+chr20_KI270870v1_alt 183433
+chrUn_GL000195v1 182896
+chr1_GL383518v1_alt 182439
+chr22_KI270736v1_random 181920
+chr10_KI270824v1_alt 181496
+chr14_KI270845v1_alt 180703
+chr3_GL383526v1_alt 180671
+chr13_KI270839v1_alt 180306
+chr22_KI270733v1_random 179772
+chrUn_GL000224v1 179693
+chr10_GL383545v1_alt 179254
+chrUn_GL000219v1 179198
+chr5_KI270792v1_alt 179043
+chr17_KI270860v1_alt 178921
+chr19_GL000209v2_alt 177381
+chr11_KI270830v1_alt 177092
+chr9_KI270719v1_random 176845
+chrUn_GL000216v2 176608
+chr22_KI270928v1_alt 176103
+chr1_KI270712v1_random 176043
+chr6_KI270800v1_alt 175808
+chr1_KI270706v1_random 175055
+chr2_KI270776v1_alt 174166
+chr18_KI270912v1_alt 174061
+chr3_KI270777v1_alt 173649
+chr5_GL383531v1_alt 173459
+chr3_JH636055v2_alt 173151
+chr14_KI270725v1_random 172810
+chr5_KI270796v1_alt 172708
+chr9_GL383541v1_alt 171286
+chr19_KI270885v1_alt 171027
+chr19_KI270919v1_alt 170701
+chr19_KI270889v1_alt 170698
+chr19_KI270891v1_alt 170680
+chr19_KI270915v1_alt 170665
+chr19_KI270933v1_alt 170537
+chr19_KI270883v1_alt 170399
+chr19_GL383575v2_alt 170222
+chr19_KI270931v1_alt 170148
+chr12_GL383550v2_alt 169178
+chr13_KI270841v1_alt 169134
+chrUn_KI270744v1 168472
+chr18_KI270863v1_alt 167999
+chr18_GL383569v1_alt 167950
+chr12_GL877875v1_alt 167313
+chr21_KI270874v1_alt 166743
+chr3_KI270924v1_alt 166540
+chr1_KI270761v1_alt 165834
+chr3_KI270937v1_alt 165607
+chr22_KI270734v1_random 165050
+chr18_GL383570v1_alt 164789
+chr5_KI270794v1_alt 164558
+chr4_GL383527v1_alt 164536
+chrUn_GL000213v1 164239
+chr3_KI270936v1_alt 164170
+chr3_KI270934v1_alt 163458
+chr9_GL383539v1_alt 162988
+chr3_KI270895v1_alt 162896
+chr22_GL383582v2_alt 162811
+chr3_KI270782v1_alt 162429
+chr1_KI270892v1_alt 162212
+chrUn_GL000220v1 161802
+chr2_KI270767v1_alt 161578
+chr2_KI270715v1_random 161471
+chr2_KI270893v1_alt 161218
+chrUn_GL000218v1 161147
+chr18_GL383572v1_alt 159547
+chr8_KI270817v1_alt 158983
+chr4_KI270788v1_alt 158965
+chrUn_KI270749v1 158759
+chr7_KI270806v1_alt 158166
+chr7_KI270804v1_alt 157952
+chr18_KI270911v1_alt 157710
+chrUn_KI270741v1 157432
+chr17_KI270910v1_alt 157099
+chr19_KI270884v1_alt 157053
+chr19_GL383574v1_alt 155864
+chr19_KI270888v1_alt 155532
+chr3_GL000221v1_random 155397
+chr11_GL383547v1_alt 154407
+chr2_KI270716v1_random 153799
+chr12_GL383553v2_alt 152874
+chr6_KI270799v1_alt 152148
+chr22_KI270731v1_random 150754
+chrUn_KI270751v1 150742
+chrUn_KI270750v1 148850
+chr8_KI270818v1_alt 145606
+chrX_KI270881v1_alt 144206
+chr21_KI270873v1_alt 143900
+chr2_GL383521v1_alt 143390
+chr8_KI270814v1_alt 141812
+chr12_GL383552v1_alt 138655
+chrUn_KI270519v1 138126
+chr2_KI270775v1_alt 138019
+chr17_KI270907v1_alt 137721
+chrUn_GL000214v1 137718
+chr8_KI270901v1_alt 136959
+chr2_KI270770v1_alt 136240
+chr16_KI270854v1_alt 134193
+chr8_KI270819v1_alt 133535
+chr17_GL383564v2_alt 133151
+chr2_KI270772v1_alt 133041
+chr8_KI270815v1_alt 132244
+chr5_KI270795v1_alt 131892
+chr5_KI270898v1_alt 130957
+chr20_GL383577v2_alt 128386
+chr1_KI270708v1_random 127682
+chr7_KI270807v1_alt 126434
+chr5_KI270793v1_alt 126136
+chr6_GL383533v1_alt 124736
+chr2_GL383522v1_alt 123821
+chr19_KI270918v1_alt 123111
+chr12_GL383549v1_alt 120804
+chr2_KI270769v1_alt 120616
+chr4_KI270785v1_alt 119912
+chr12_KI270834v1_alt 119498
+chr7_GL383534v2_alt 119183
+chr20_KI270869v1_alt 118774
+chr21_GL383581v2_alt 116689
+chr3_KI270781v1_alt 113034
+chr17_KI270730v1_random 112551
+chrUn_KI270438v1 112505
+chr4_KI270787v1_alt 111943
+chr18_KI270864v1_alt 111737
+chr2_KI270771v1_alt 110395
+chr1_GL383519v1_alt 110268
+chr2_KI270768v1_alt 110099
+chr1_KI270760v1_alt 109528
+chr3_KI270783v1_alt 109187
+chr17_KI270859v1_alt 108763
+chr11_KI270902v1_alt 106711
+chr18_GL383568v1_alt 104552
+chr22_KI270737v1_random 103838
+chr13_KI270843v1_alt 103832
+chr22_KI270877v1_alt 101331
+chr5_GL383530v1_alt 101241
+chr11_KI270721v1_random 100316
+chr22_KI270738v1_random 99375
+chr22_GL383583v2_alt 96924
+chr2_GL582966v2_alt 96131
+chrUn_KI270748v1 93321
+chrUn_KI270435v1 92983
+chr5_GL000208v1_random 92689
+chrUn_KI270538v1 91309
+chr17_GL383566v1_alt 90219
+chr16_GL383557v1_alt 89672
+chr17_JH159148v1_alt 88070
+chr5_GL383532v1_alt 82728
+chr21_KI270872v1_alt 82692
+chrUn_KI270756v1 79590
+chr6_KI270758v1_alt 76752
+chr12_KI270833v1_alt 76061
+chr6_KI270802v1_alt 75005
+chr21_GL383580v2_alt 74653
+chr22_KB663609v1_alt 74013
+chr22_KI270739v1_random 73985
+chr9_GL383540v1_alt 71551
+chrUn_KI270757v1 71251
+chr2_KI270773v1_alt 70887
+chr17_JH159147v1_alt 70345
+chr11_KI270827v1_alt 67707
+chr1_KI270709v1_random 66860
+chrUn_KI270746v1 66486
+chr16_KI270856v1_alt 63982
+chr21_GL383578v2_alt 63917
+chrUn_KI270753v1 62944
+chr19_KI270868v1_alt 61734
+chr9_GL383542v1_alt 60032
+chr20_KI270871v1_alt 58661
+chr12_KI270836v1_alt 56134
+chr19_KI270865v1_alt 52969
+chr1_KI270764v1_alt 50258
+chrUn_KI270589v1 44474
+chr14_KI270726v1_random 43739
+chr19_KI270866v1_alt 43156
+chr22_KI270735v1_random 42811
+chr1_KI270711v1_random 42210
+chrUn_KI270745v1 41891
+chr1_KI270714v1_random 41717
+chr22_KI270732v1_random 41543
+chr1_KI270713v1_random 40745
+chrUn_KI270754v1 40191
+chr1_KI270710v1_random 40176
+chr12_KI270837v1_alt 40090
+chr9_KI270717v1_random 40062
+chr14_KI270724v1_random 39555
+chr9_KI270720v1_random 39050
+chr14_KI270723v1_random 38115
+chr9_KI270718v1_random 38054
+chrUn_KI270317v1 37690
+chr13_KI270842v1_alt 37287
+chrY_KI270740v1_random 37240
+chrUn_KI270755v1 36723
+chr8_KI270820v1_alt 36640
+chr1_KI270707v1_random 32032
+chrUn_KI270579v1 31033
+chrUn_KI270752v1 27745
+chrUn_KI270512v1 22689
+chrUn_KI270322v1 21476
+chrM 16569
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+chrUn_KI270366v1 8320
+chrUn_KI270511v1 8127
+chrUn_KI270448v1 7992
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+chrUn_KI270581v1 7046
+chrUn_KI270582v1 6504
+chrUn_KI270515v1 6361
+chrUn_KI270588v1 6158
+chrUn_KI270591v1 5796
+chrUn_KI270522v1 5674
+chrUn_KI270507v1 5353
+chrUn_KI270590v1 4685
+chrUn_KI270584v1 4513
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+chrUn_KI270467v1 3920
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+chrUn_KI270593v1 3041
+chrUn_KI270528v1 2983
+chrUn_KI270587v1 2969
+chrUn_KI270364v1 2855
+chrUn_KI270371v1 2805
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+chrUn_KI270374v1 2656
+chrUn_KI270411v1 2646
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+chrUn_KI270509v1 2318
+chrUn_KI270315v1 2276
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+chrUn_KI270518v1 2186
+chrUn_KI270530v1 2168
+chrUn_KI270304v1 2165
+chrUn_KI270418v1 2145
+chrUn_KI270424v1 2140
+chrUn_KI270417v1 2043
+chrUn_KI270508v1 1951
+chrUn_KI270303v1 1942
+chrUn_KI270381v1 1930
+chrUn_KI270529v1 1899
+chrUn_KI270425v1 1884
+chrUn_KI270396v1 1880
+chrUn_KI270363v1 1803
+chrUn_KI270386v1 1788
+chrUn_KI270465v1 1774
+chrUn_KI270383v1 1750
+chrUn_KI270384v1 1658
+chrUn_KI270330v1 1652
+chrUn_KI270372v1 1650
+chrUn_KI270548v1 1599
+chrUn_KI270580v1 1553
+chrUn_KI270387v1 1537
+chrUn_KI270391v1 1484
+chrUn_KI270305v1 1472
+chrUn_KI270373v1 1451
+chrUn_KI270422v1 1445
+chrUn_KI270316v1 1444
+chrUn_KI270338v1 1428
+chrUn_KI270340v1 1428
+chrUn_KI270583v1 1400
+chrUn_KI270334v1 1368
+chrUn_KI270429v1 1361
+chrUn_KI270393v1 1308
+chrUn_KI270516v1 1300
+chrUn_KI270389v1 1298
+chrUn_KI270466v1 1233
+chrUn_KI270388v1 1216
+chrUn_KI270544v1 1202
+chrUn_KI270310v1 1201
+chrUn_KI270412v1 1179
+chrUn_KI270395v1 1143
+chrUn_KI270376v1 1136
+chrUn_KI270337v1 1121
+chrUn_KI270335v1 1048
+chrUn_KI270378v1 1048
+chrUn_KI270379v1 1045
+chrUn_KI270329v1 1040
+chrUn_KI270419v1 1029
+chrUn_KI270336v1 1026
+chrUn_KI270312v1 998
+chrUn_KI270539v1 993
+chrUn_KI270385v1 990
+chrUn_KI270423v1 981
+chrUn_KI270392v1 971
+chrUn_KI270394v1 970
--
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