diff --git a/docs/content/tools/subtract.rst b/docs/content/tools/subtract.rst index 50e28e19a70b9569919d51935536a9722eb852a5..91282858e5a7caaba49964d870d70c32c2b6d423 100755 --- a/docs/content/tools/subtract.rst +++ b/docs/content/tools/subtract.rst @@ -33,12 +33,11 @@ Usage and option summary =========================== =============================================================================================================================================================================================================== Option Description =========================== =============================================================================================================================================================================================================== -**-f** Minimum overlap required as a fraction of A. Default is 1E-9 (i.e. 1bp). -**-s** Force "strandedness". That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. +**-f** Minimum overlap required as a fraction of A. Default is 1E-9 (i.e. 1bp). +**-s** Force "strandedness". That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. **-S** Require different strandedness. That is, only report hits in B that overlap A on the _opposite_ strand. By default, overlaps are reported without respect to strand. **-A** Remove entire feature if any overlap. That is, by default, only subtract the portion of A that overlaps B. Here, if any overlap is found (or ``-f`` amount), the entire feature is removed. -**-N** Same as -A except when used with -f, the amount is the sum - of all features (not any single feature). +**-N** Same as -A except when used with -f, the amount is the sum of all features (not any single feature). =========================== ===============================================================================================================================================================================================================