From d583943ddce6acec8f840dca634dff8cde1dff86 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Tue, 6 Jul 2010 14:43:50 -0400
Subject: [PATCH] Updated the pairToPair usage statement.
---
src/pairToPair/pairToPairMain.cpp | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/pairToPair/pairToPairMain.cpp b/src/pairToPair/pairToPairMain.cpp
index c97e40c0..c0cb5191 100755
--- a/src/pairToPair/pairToPairMain.cpp
+++ b/src/pairToPair/pairToPairMain.cpp
@@ -164,8 +164,8 @@ void ShowHelp(void) {
cerr << "\t-slop \t" << "The amount of slop (in b.p.). to be added to each footprint." << endl << endl;
cerr << "\t-ss\t" << "Add slop based to each BEDPE footprint based on strand." << endl;
- cerr << "\t\t- If strand is \"+\", slop is only added to the end coordinates." << endl << endl;
- cerr << "\t\t- If strand is \"-\", slop is only added to the start coordinates." << endl << endl;
+ cerr << "\t\t- If strand is \"+\", slop is only added to the end coordinates." << endl;
+ cerr << "\t\t- If strand is \"-\", slop is only added to the start coordinates." << endl;
cerr << "\t\t- By default, slop is added in both directions." << endl << endl;
cerr << "\t-is\t" << "Ignore strands when searching for overlaps." << endl;
--
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