diff --git a/README.rst b/README.rst index 35b7f30c8fe3c20930097995fda6283c905aa8c6..22a90ef7d93a6fdcbc38d0ffd51eed9cd9ec39c9 100644 --- a/README.rst +++ b/README.rst @@ -26,21 +26,21 @@ http://code.google.com/p/bedtools/wiki/UsageAdvanced Installation ------------ - #. Unpack the source downloaded tarball. - #. cd into the expanded folder. - #. Type "make clean" and hit enter. - #. Type "make all" and hit enter. - #. If you encountered no errors, then all of the BED Tools should now be in bin/ - If not, try to troubleshoot then email me: aaronquinlan at gmail dot com - #. Copy the files in bin/ to ~/bin or if you have the privileges, to /usr/local/bin. - #. Use the tools. + # Unpack the source downloaded tarball. + # cd into the expanded folder. + # Type "make clean" and hit enter. + # Type "make all" and hit enter. + # If you encountered no errors, then all of the BED Tools should now be in bin/ + If not, try to troubleshoot then email me: aaronquinlan at gmail dot com + # Copy the files in bin/ to ~/bin or if you have the privileges, to /usr/local/bin. + # Use the tools. List of available tools ----------------------- *Utility* *Description* -========================= ==================================================== +========================= ======================================================================================================= *intersectBed (BAM)* Returns overlaps between two BED/GFF/VCF files. *pairToBed (BAM)* Returns overlaps between a paired-end BED file and a regular BED/VCF/GFF file.