From fabf0acda0484be96050ec44ee6bc1137c41c3c4 Mon Sep 17 00:00:00 2001
From: Aaron <aaronquinlan@gmail.com>
Date: Thu, 6 May 2010 08:48:37 -0400
Subject: [PATCH] Fixed constructor definition in closestBed.h. Caused
compilation issues for Gordon Assaf.
---
src/closestBed/closestBed.cpp | 4 ++--
src/closestBed/closestBed.h | 4 +---
2 files changed, 3 insertions(+), 5 deletions(-)
diff --git a/src/closestBed/closestBed.cpp b/src/closestBed/closestBed.cpp
index e9e022bc..07be3583 100755
--- a/src/closestBed/closestBed.cpp
+++ b/src/closestBed/closestBed.cpp
@@ -13,8 +13,8 @@
#include "closestBed.h"
const int MAXSLOP = 256000000; // 2*MAXSLOP = 512 megabases.
- // We don't want to keep looking if we
- // can't find a nearby feature within 512 Mb.
+ // We don't want to keep looking if we
+ // can't find a nearby feature within 512 Mb.
const int SLOPGROWTH = 2048000;
diff --git a/src/closestBed/closestBed.h b/src/closestBed/closestBed.h
index 41c43cd6..01acdc9a 100755
--- a/src/closestBed/closestBed.h
+++ b/src/closestBed/closestBed.h
@@ -27,7 +27,7 @@ class BedClosest {
public:
// constructor
- BedClosest(string &bedAFile, string &bedAFile, bool &forceStrand, string &tieMode);
+ BedClosest(string &bedAFile, string &bedBFile, bool &forceStrand, string &tieMode);
// destructor
~BedClosest(void);
@@ -46,8 +46,6 @@ private:
BedFile *_bedA, *_bedB;
// methods
- void reportA(const BED &);
- void reportB(const BED &);
void reportNullB();
void FindWindowOverlaps(BED &, vector<BED> &);
--
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