============================ === BEDTools Version 2.0 === ============================ Created by Aaron Quinlan Spring 2009. Copyright 2009 Aaron Quinlan. All rights reserved. http://people.virginia.edu/~arq5x/bedtools.html Free for non-profit or academic use. Please contact me for commercial use. ===FAQ=== 1. Why am I not finding overlap with my SNPs? When intersecting SNPs, make sure the coordinate conform to the UCSC format. That is, the start position for each SNP should be SNP position - 1 and the end position should be SNP position. For example: chr7 10000001 10000002 rs123464