Commits · main · Aurélien Ginolhac / snakemake-rna-seq

02 Oct, 2020 2 commits
- fix #4 · 53be7dd1
  Aurélien Ginolhac authored Oct 02, 2020
  
  53be7dd1
- dashes forbidden in contrasts (fix #5 ) · 37d64b6c
  Aurélien Ginolhac authored Oct 02, 2020
  
  37d64b6c
17 Sep, 2020 5 commits
- also assert the keys in contrasts · 7a94b7d9
  Aurélien Ginolhac authored Sep 17, 2020
  
  7a94b7d9
- check if contrasts are present in sample conditions · 5b5a7320
  Aurélien Ginolhac authored Sep 17, 2020
  
  5b5a7320
- featurecounts se/pe mix, fix #3 · ed75c56b
  Aurélien Ginolhac authored Sep 17, 2020
  
  ed75c56b
- we use featurecounts · 345d01e5
  Aurélien Ginolhac authored Sep 17, 2020
  
  345d01e5
- update obsolete schemas · c4cf88cc
  Aurélien Ginolhac authored Sep 17, 2020
  
  c4cf88cc
10 Sep, 2020 5 commits
- for rc, fix #1 and #2 · 3f695ad7
  Aurélien Ginolhac authored Sep 10, 2020
  
  3f695ad7
- schemas and slurm shoud be in workflow · c6624f1a
  Aurélien Ginolhac authored Sep 10, 2020
  
  c6624f1a
- fix last linting warning · 38fe026a
  Aurélien Ginolhac authored Sep 10, 2020
  
  38fe026a
- clean-up code · ed2a94f5
  Aurélien Ginolhac authored Sep 10, 2020
  
  ed2a94f5
- move utils from Snakefile for common.smk · e7992ab7
  Aurélien Ginolhac authored Sep 10, 2020
  
  e7992ab7
09 Sep, 2020 1 commit
- align is now PE/SE and collapsing replicates if present · 48a293c4
  Aurélien Ginolhac authored Sep 09, 2020
  
  48a293c4
07 Sep, 2020 2 commits
- bugfix AdapterRemoval PE, each sample return a simple list · 0ced35bd
  Aurélien Ginolhac authored Sep 07, 2020
  
  0ced35bd
- rename to relevant name: settings · e2b1973b
  Aurélien Ginolhac authored Sep 07, 2020
  
  e2b1973b
13 Jul, 2020 2 commits
- fix date · 66273919
  Aurélien Ginolhac authored Jul 13, 2020
  
  66273919
- after linting · d9570cd6
  Aurélien Ginolhac authored Jul 13, 2020
  
  d9570cd6
10 Jul, 2020 1 commit
- new snakemake and singularity image · af357220
  Aurélien Ginolhac authored Jul 10, 2020
  
  af357220
14 Feb, 2020 6 commits
- forgot credit to Johannes · 37cc4dc0
  Aurélien Ginolhac authored Feb 14, 2020
  
  37cc4dc0
- rephrase README · bf460a3c
  Aurélien Ginolhac authored Feb 14, 2020
  
  bf460a3c
- add reporting instructions · 4b70dfec
  Aurélien Ginolhac authored Feb 14, 2020
  
  4b70dfec
- don't use vst when less than 1000 genes · 1e6dd539
  Aurélien Ginolhac authored Feb 14, 2020
  
  1e6dd539
- v5.9.1 is not buggy with singularity_args · 24ec02e0
  Aurélien Ginolhac authored Feb 14, 2020
  
  24ec02e0
- ref build now a variable from config · d7fd81ec
  Aurélien Ginolhac authored Feb 14, 2020
  
  d7fd81ec
13 Feb, 2020 1 commit
- more instructions · e56de3b7
  Aurélien Ginolhac authored Feb 13, 2020
  
  e56de3b7
12 Feb, 2020 5 commits
- fetch repo files · f2e636f8
  Aurélien Ginolhac authored Feb 12, 2020
  
  f2e636f8
- Add CHANGELOG · 2a6081fb
  Aurélien Ginolhac authored Feb 12, 2020
  
  2a6081fb
- Add LICENSE · 290b9b39
  Aurélien Ginolhac authored Feb 12, 2020
  
  290b9b39
- with intro · 7693c4a7
  Aurélien Ginolhac authored Feb 12, 2020
  
  7693c4a7
- add README · 4357ba22
  Aurélien Ginolhac authored Feb 12, 2020
  
  4357ba22
11 Feb, 2020 1 commit
- first commit · 5ce24baf
  Aurélien Ginolhac authored Feb 11, 2020
  
  5ce24baf