diff --git a/Integration/MINERVA_build/combine_sources.R b/Integration/MINERVA_build/combine_sources.R index dd23ffd1a1adef3371badba0965ba59c0b96f947..10c6c81d9d52832de5751075e0ded03837617bfe 100644 --- a/Integration/MINERVA_build/combine_sources.R +++ b/Integration/MINERVA_build/combine_sources.R @@ -96,7 +96,7 @@ construct_overview <- function(elements) { ### Resource: url to the xml content of the diagram ### Type: what kind of file do we integrate ### Name: under which name the diaram is to be shown in the build -res <- read.csv(url("https://git-r3lab.uni.lu/covid/models/raw/master/Integration/resources.csv"), +res <- read.csv(url("https://git-r3lab.uni.lu/covid/models/raw/master/Integration/MINERVA_build/resources.csv"), header = T, stringsAsFactors = F) ### Filter only these to be included res <- res[res$Include == "Yes",] diff --git a/Integration/MINERVA_build/resources.csv b/Integration/MINERVA_build/resources.csv index d7b3d1ca192f09bc76614366f1aeac4e14506f20..2ac20904ca40fde5f9b2792be361c3d070433aac 100644 --- a/Integration/MINERVA_build/resources.csv +++ b/Integration/MINERVA_build/resources.csv @@ -19,7 +19,7 @@ Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/Interferon%20pat Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/JNK%20pathway/JNK_pathway.xml,CellDesigner_SBML,JNK pathway Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/RTC-and-transcription/RTC-and-transcription-CD.xml,CellDesigner_SBML,RTC and transcription Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/E/E_SARS_CoV_2_22_05_2020.xml,CellDesigner_SBML,E protein interactions -Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp4_Nsp6/Nsp4_Nsp6_v2.xml,CellDesigner_SBML,Nsp4 and Nsp6 interactions +Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp4_Nsp6/Nsp4_Nsp6_v3.xml,CellDesigner_SBML,Nsp4 and Nsp6 interactions Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp9/Nsp9.xml,CellDesigner_SBML,Nsp9 interactions Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp14/Nsp14.xml,CellDesigner_SBML,Nsp14 and metabolism Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Orf3a/Orf3a.xml,CellDesigner_SBML,Orf3a interactions