From ac052dd322a304f31eace38a040b8c266a8ff271 Mon Sep 17 00:00:00 2001
From: Marek Ostaszewsski <marek.ostaszewski@uni.lu>
Date: Tue, 19 Jan 2021 20:21:27 +0100
Subject: [PATCH] HMOX1 example added
---
Resources/Hipathia/resolve_aliases.R | 13 +++++++++++--
1 file changed, 11 insertions(+), 2 deletions(-)
diff --git a/Resources/Hipathia/resolve_aliases.R b/Resources/Hipathia/resolve_aliases.R
index 0a016bb..bf894b6 100644
--- a/Resources/Hipathia/resolve_aliases.R
+++ b/Resources/Hipathia/resolve_aliases.R
@@ -21,11 +21,20 @@ ask_GET <- function(fask_url, verbose = F) {
return(NULL)
}
+
+
+### Example 1
+ER_sif_raw <- "https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"
### Define the source diagram name
diag_name <- "Endoplasmatic Reticulum stress"
-### Read in the raw SIF version (here straight from the github of Aurelien)
-raw_sif <- read.table(url("https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/ER_Stress_stable_raw.sif"),
+### Example 2
+HMOX_sif_raw <- "https://git-r3lab.uni.lu/covid/models/-/raw/master/Executable%20Modules/SBML_qual_build/sif/HMOX1_Pathway_stable_raw.sif"
+### Define the source diagram name
+diag_name <- "HMOX1 pathway"
+
+### Read in the raw SIF version (here straight from the gitlab repo)
+raw_sif <- read.table(url(HMOX_sif_raw),
sep = " ", header = F, stringsAsFactors = F)
### Get MINERVA elements
--
GitLab