diff --git a/R/leMsMs.r b/R/leMsMs.r index 7b513e354268ae9eed5316865d2dc65f483a7d92..ed47a7e8ecfd9f72c5ebc301440a262bd74fdc04 100755 --- a/R/leMsMs.r +++ b/R/leMsMs.r @@ -300,7 +300,7 @@ msmsWorkflow <- function(w, mode="pH", steps=c(1:8), confirmMode = FALSE, newRec if(RMassBank.env$verbose.output){ multiplicityNotOkCount <- sum(!w@aggregated$filterOK) if(multiplicityNotOkCount > 0) - cat(paste("### Warning ### ", multiplicityNotOkCount, " / ", nrow(w@aggregated[, c("mzFound", "intensity", "formulaCount", "dppmBest")]), " peaks do not fulfill the multiplicity criterion\n", sep = "")) + cat(paste("### Warning ### ", multiplicityNotOkCount, " / ", nrow(w@aggregated), " peaks do not fulfill the multiplicity criterion\n", sep = "")) } w@aggregated <- processProblematicPeaks(w, mode, archivename)