GitLab

* R/api.R (create_plots): Fixed argument to single plot saving function.

* R/plotting.R <saving plots>: Clean up.

* R/resources.R(SYM_YES,SYM_NO): Updated. Windows does not like Unicode.

* R/shiny-ui-base.R(server): Renamed server_in_progress

(server_old): Removed.

Now, one can export Emmas-MetFrag-script-compatible summary file.

* R/mix.R(add_msms_peaks): New function.

* R/shiny-ui-base.R(exportsumm_b,export_summ_ui): New observer/output.

* inst/rmd/app.Rmd(export_summ_ui): New element.

R/shiny-ui-base.R:

(dblclick_callback): New JS callback.

Many new/updated functions ... (excuse my brevity).

This needs much more love.

* R/shiny-ui-base.R(shinymsg): New function.

* R/resources.R(SYM_YES,SYM_NO): New parameters.

* R/shiny-ui-base.R: Completely removed server functionality from
app.Rmd and added here.

(mk_shinyscreen_server): New function.

A lot of new controls and removal of old content.

* R/api.R(create_plots): Updated. Rewritten for functions in
plotting.R

Contains everything needed for the plotting subsystem.

R/plotting.R(sci10, scale_y, pal_maker, plot_base): New
functions. Updated functions. All helpers.

(data4plot_ms1_cgram, data4plot_ms2_cgram, data4plot_ms2_spec): New
functions. Generate data tables used in plotting.

(plot_text): New function. Only plots text.

(plot_theme): New function. Customised theme.

(plot_palette): New function. Generate palette.

(plot_eic_w_facet,plot_spec_w_facet): New functions. Top-level plots.

(table_eic,table_spec): New functions. Table legends.

(plot_save_single): New function.

* R/resources.R(SIGNF_I,SIGNF_MZ,SIGNF_RT): New parameters. Control
significant digits.

* R/mix.R(fig_conf): New function. Configures figures section of the
starting state.

(new_conf): Updated.

(rt_in_min): Updated.

* R/mix.R(many obsolete plot functions): Removed. Only struct
generation left alone, since this is yet to be implemented.

R/base.R(yesno2log,log2yesno): New functions. Convert between logical
and factor Yes/No arrays.

fixlog2yesno: New function. Factorless version of log2yesno.